Gene detail information of Glyur000179s00010713.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G18350.1 | 7.00E-41 | homeobox protein 24 |
| NR | XP_007156052.1 | 2.60E-88 | hypothetical protein PHAVU_003G254200g [Phaseolus vulgaris] |
| Swissprot | tr|Q9ZPW7|ZHD6_ARATH | 7.00E-55 | Zinc-finger homeodomain protein 6 |
| trEMBL | tr|V7CGK1|V7CGK1_PHAVU | 1.00E-88 | Uncharacterized protein {ECO:0000313|EMBL:ESW28046.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00179 | 256404 | 257495 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | zf-HD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000179s00010713.1 | PF04770.7 | ZF-HD_dimer | 152 | 204 | 9.60E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.663 |
| SRR1811619 | moderate drought stress | 0.619 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.769 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.885 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.102 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.100 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.101 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.101 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.087 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.103 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.001 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.045 |
| SRR2967015 | Control (Tissue:root) | 0.020 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.877 |
| SRR9715740 | Leave | 0.257 |
| SRR9715741 | Leave | 0.809 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.644 |
| SRR9715743 | Root | 0.519 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.143 |
| SRR8749028 | MeJA induced 9h | 0.746 |
| SRR8749029 | MeJA induced 9h | 0.111 |
| SRR8749030 | Uninduced | 0.227 |
| SRR8749031 | Uninduced | 0.560 |
| SRR8749032 | Uninduced | 0.245 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.718 |
| SRR8400027 | Control-Root | 1.598 |