Gene detail

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Gene detail information of Glyur000180s00014073.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G25440.1	1.00E-96	RNA-binding CRS1 / YhbY (CRM) domain protein
NR	XP_004497709.1	0	PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic-like [Cicer arietinum]
Swissprot	tr\|Q67XL4\|Y3544_ARATH	2.00E-145	Uncharacterized CRM domain-containing protein At3g25440, chloroplastic (Precursor)
trEMBL	tr\|K7K5R7\|K7K5R7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G00610.2}

Sequence

Transcript Sequence

>Glyur000180s00014073.1
ATGGTGTGGAGGGTTTTGGCATCACCAGTCCTCACTAAATCTCACTTCCACAAGAATCTCTCCTCAAATTCTTCGCTTCTCACTCCCTTCTTCTTGTCCAATTTCTCACTTCGCAAAGCAAGCTTGAACTATGTTATATGCAAGGCTTGTGGCCAGGAACCTGTTTTTAACCGCCGTAGTGATTTAAAAGCACCTCCTTTCGAAGGGCGCGAAAGCTTTCATTCGGGTCCATTTCTAAGGTTTAATGATGTTAAGGCTGTGGAGCAGCTTCAGAATTCTGAGAAACCCTCAAGTGGTAATGGTGGTAATGCCAAAGTAATGAGGAAAAAAATGAAGGGGAAAAGAGCAGTTGTGAGATGGCTTAAGTTCTTTAGATGGAAGAAGAAGAAAGAGTTTGAAAGGATGACAGCAGAGGAAAAACTTTTATACAAATTGTTAAAGGCTCGAAAAAAAGAAGAGAGACTTTGTGAAGCCCTGGAGAAGATTGAGCCTAAAGAGTCATCCAAAACAACCCATGATCCTGAGATTTTGACACCGGAAGAACACTTTTTCTTTTTAAAGATGGGCCTCAAATGCAAAAATTATGTGCCGGTTGGAAGGCGGGGAATTTACCAAGGTGTAATTTTGAACATGCATCTGCATTGGAAAAAACATCAAACATTGAAAGTGGTGGTGAAGACATTTCCACCAGAGGAGGTTAAGGAGATTGCCACTGAGCTGGCAAGATTGACTGGAGGTATAGTGCTTCACATTCATGAAGATGACACAATAATAATGTACAGAGGGAAAAACTACTCTCAACCACCCACAGAGATAATGTCTCCACGAGTCACTCTCTCAAGAAAGAAGGCATTGGATAAATCAAAATATCGGGATGCCCTACGAGCCGTGAGGAGATATATTCCCAGACTCGAGCAAGAGCTCGAAATTCTTCGAGCACAACTTAAAAGCACGGCTGAAGGTAACACAGATGCTGTTGAGGGAATCCAAGAAAGCGACAAAGCAAGCATTGAACCTGNTAGTGTTTCAAATTTCGAACTAGAGAATTCAGATAAACTTCGTCAGATGATAAATGATAACAGTGGGTGCTCAGAGAATGAGGAAGATATAGACTCTGAATTGGATTCATGTTCTGATAAGTTATCAGATATCTTTGAGACAGATTCAGATACAGAGAATTCAGACAAGGAGGAGAAACCTCTTTATTTGGACGAGTTTGATAATTTTCCACAGCAAAGCGATGGAGAAACAGATGATTTTGAGGAGCATCTGCAACAGATATCTTTGAACTCAAAAAACATGAAAAAAGATGTCGACTTACCCAAGTTTGATGAGGTTGACAAGATTTTTCTGCGTGCTGCATCCTTTTTAAAGAAAAAGAGAAAATGAGAAATTTGTAAAGGAC

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00180	171029	174096	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01148	PARN	EC:3.1.13.4	RNA degradation	map03018

Gene Ontology

molecular_function
GO:0003723 RNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000180s00014073.1	PF01985.16	CRS1_YhbY	177	261	4.70E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.665
SRR1783600	control	3.682
SRR1783602	moderate drought stress	3.884
SRR1811619	moderate drought stress	3.737

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.927
DRR006520	Root Summer glycyrrhizin high producing strain	6.684
DRR006521	Root Winter glycyrrhizin high producing strain	10.758
DRR006522	Root Winter glycyrrhizin high producing strain	10.453
DRR006523	Root Summer glycyrrhizin low producing strain	5.375
DRR006524	Root Summer glycyrrhizin low producing strain	5.942
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.851
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.714

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	5.341
SRR2868004	Drought Stress(Tissue:root)	5.606
SRR2967015	Control (Tissue:root)	5.506

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	3.694
SRR9715740	Leave	5.231
SRR9715741	Leave	3.440
SRR9715739	Root	0.277
SRR9715742	Root	1.850
SRR9715743	Root	1.712

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.237
SRR8749028	MeJA induced 9h	6.830
SRR8749029	MeJA induced 9h	5.896
SRR8749030	Uninduced	2.579
SRR8749031	Uninduced	0.952
SRR8749032	Uninduced	0.607

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	7.116
SRR8400027	Control-Root	6.987