Gene detail

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Gene detail information of Glyur000180s00014082.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G32700.5	0	LEUNIG_homolog
NR	XP_007145511.1	0	hypothetical protein PHAVU_007G244700g [Phaseolus vulgaris]
COG	YP_001865069.1	3.00E-34	hypothetical protein Npun_F1419 [Nostoc punctiforme PCC 73102]
Swissprot	tr\|Q9FUY2\|LEUNG_ARATH	2.00E-166	Transcriptional corepressor LEUNIG
trEMBL	tr\|V7BKD0\|V7BKD0_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW17505.1}

Sequence

Transcript Sequence

>Glyur000180s00014082.1
CTGGGACGGATGGGAACCGCGCTCCGCCCGAACCTGAACCTTCTCAGCTTCGGCTTGTCAACGAACCTGAGCTTCGGAATCTCATTCATTCAAACTCTCCCATCTTTCACCTTACACAGTTGAAAAGCTTGTTGAACCAGTTCAAACTCTAGTCCTTCACTGTCACTGACTCACGAACCCTAATTCCCCTTCATTTCTCACCACTCTCGATCTTCATTTCAGCGATTCAGTGACAGCAGGTGCTGAATTCGCCTAATTTTGCTTGAACGGCTCTGTTTTTTTTTGTTTATGAACGAGAGTCGATTGTTCATGGTTTGTGATNTCTGAAATTGAGAGCCGTTTTTTCACCCGTGGTGATCGTCGACGCATGAAGCTCCTGATTGGTAATGCAGGAGTTTGATCCAGCTATTGTTGTGTTTTGAGTTTAATTTTAATTTTACTTCTGAACGGGAAACTATGGCGCAGAGTAATTGGGAAGCAGATAAGATGCTTGATGTTTACATTTATGATTATTTGGTGAAGAAAAAGTTGCACAACACAGCCAAGTCATTCATGACAGAAGGGAAGGTTTCTCCTGATCCCGTAGCAATTGATGCTCCTGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTTTGGGATATTTTTATTGCAAGGACAAATGAGAAACATTCTGAGACCGCTGCAGCATATTTAGAGGCTCAACAGATTAAAGCAAAAGAACAACAACAATTGCAAATGCAGCAATTACAACTAATGCGTCAAGCGCAGCTGCAAAGAAGGGATTCTAATCATCCTCCCCTTGGAGGTACTGTAAATGCTATCACTACAGAAGGAGTGCTCGGGCAATCTACTGCCAGTGCTTTGGCTGCAAAAATGTATGAGGAGCGGATGAAGCACTCTAACCCTATGGATACAGAGACATCTCAACCACTTCTAGATGCCAGAATGGCCCTTTTGAAATCAACAAATCATCCTGGTCAGATGGTTCAAGGAAATTCAGGAAGTGTGACTGCAGCTTTACAGCAAATCCAGGCTAGAACTCAGCAAACCCCTCAGGAGATCAAAAGTGAAGTCAACATGGGCAACATGCAGAGATCCGTACCTATGGANGCTTCTTCAATTTATGGGCAGGGAGGAATGCAGTCAAAGCCTGGAATCACAAACGCAGGATTAAATCCGGGAGTTGGTGGTCTCACATTGAAAGGATGGCCTTTAACTGGCATAGATCAAATTCGCCCAGGTTTTGGAGCACAAGTTCAAAAGCCTCTCCTTCAGAGTGCAAATCAGTTCCAGCTTTTGCCACAACAACAACAACAACAGCTCCTTGCACAGGTACAGGCACAAGGAAATATTGGCAATTCGCCTGTGTATGGAGATATGGATCCACAACGATTAAGGGGATTAGCTAGGGGAAGTTTGAATGTAAAAGACGGTCAACCAATTGCAAATGATGGATCAATAGGCTCTCCAATGCAATCTACTTCATCTAAGCAGATCAACATGCCACCAATCCAACAATCCACCTCTCAGCAACAACAGGATCCCTTGCATCCACAGCAACTGGTGCAGAATAACCGAAAAAGGAAGGGGCCTACATCTTCGGGAGCTGCCAACAGTACTGGTACAGGAAATACACTTGGCCCGTCTAATTCTCAGCCATCAACTCCATCTACTCATACTCCCGGTGATGGAGTTGCTATGGCGGGTAACTTGCAGAATGTTACTGGTGTATCCAAAGGTTTGATGATGTATGGTACTGAAGGAGCAGGTGGTCTTGCATCTTCCACGAACCAGCTGTTGCAGGATGACATGGAACATTTTGGAGATGTTGGCTCCTTAGATGATAATGTGGAATCATTTCTCTCACAGGATGATGGTGATGGAAGGGACTTATTTGGCACGTTAAAACGGAACCCTTCTGAACATGCTACAGATGCTTCAAAAGGCTTTTCCTTCAGTGAAGTTGGTTCTATACGCAAAAGCAACAGCAAAGTTGTATGCTGTCATTTCTCTTCAGATGGGAAATTATTAGCTAGCGCTGGACATGACAAGAAGGTTGTTCTGTGGAACATGGAGACACTGCAAACAGAGAGCACACCAGAGGAACACAGTCTTATTATTACTGACGTTCGCTTCAGACCGAATTCAACTCAGCTGGCAACGTCTTCATTTGATACAACTGTGCGACTTTGGGATGCTGCAGATCCAAGCTTTTCTTTGCAGGCATATAGTGGTCATACTTCACACGTGGTGTCCCTNGATTTCCACCCAAAGAAAAATGACCTTTTCTGTTCTTGTGATGATAACAATGAGATTCGCTTCTGGAATATTAGTCAATATTCTTGCACTCGTGTTTTTAAGGGAGGATCTACACAGGTGAGGTTTCAGCCAAGGATCGGAAACCTTCTGGCTGCAGCATCTGGCAGTGTTGTGTCTCTCTTCGATGTTGAGACTGACAGGCAGATGCACTCATTACAGGGACACTCTGCAGAGGTACACTGTGTATGTTGGGATACAAATGGAGATTACTTGGCATCTGTGAGTCAAGAATCTGTCAAAGTGTGGTGTCTTGCCNCTGGGGAATGCATTCATGAACTTAATTCCAGTGGAAACATGTTTCATTCTTGTGTTTTTCACCCAAGCTACTCCACTCTCTTGGTTATTGGAGGATACCAGTCATTGGAGCTATGGAACATGNCCGAGAATAAATGTATGACCATACCAGCTCATGAGTGTGTAATATCAGCTCTAGCACAATCACCGGTGACCGGGATGGTTGCTTCTGCCAGTCATGACAAGTCTGTAAAGATTTGGAAATAAATTTGATTGTTCTGAGGTTCAAACGGCCATATCAAGTATTATTTATACCTGTTACGTTCTGAATCTGATGGGCAGTACCAGTCCGAATAAAGAACAGCGTTGAAGAAATTACATAGATTTGCATGGGAGAGAAGAATCCTCCATGTATTCCCCCTCCCCCTTTTTTCCCTTCATTATCTACTGTGACAAGGGGCTTTATGCATTTTCACTGTTCACAAGTGGTTGTTCAGCAGTTCTGTAAGCCAGGATGTGAAGCCCTCTAAAACTGAT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00180	240372	252760	+

Gene family

Gene family	subfamily
Transcription Factors Family	LUG
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000180s00014082.1	PF08513.6	LisH	10	35	1.40E-07
Glyur000180s00014082.1	PF00400.27	WD40	510	538	1.40E-05
Glyur000180s00014082.1	PF00400.27	WD40	548	580	6.10E-07
Glyur000180s00014082.1	PF00400.27	WD40	588	624	0.00022
Glyur000180s00014082.1	PF00400.27	WD40	670	703	5.90E-06
Glyur000180s00014082.1	PF00400.27	WD40	754	787	1.30E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.023
SRR1783600	control	16.047
SRR1783602	moderate drought stress	13.337
SRR1811619	moderate drought stress	13.181

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.797
DRR006520	Root Summer glycyrrhizin high producing strain	12.818
DRR006521	Root Winter glycyrrhizin high producing strain	8.267
DRR006522	Root Winter glycyrrhizin high producing strain	8.039
DRR006523	Root Summer glycyrrhizin low producing strain	16.205
DRR006524	Root Summer glycyrrhizin low producing strain	16.827
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.387
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.589

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	26.477
SRR2868004	Drought Stress(Tissue:root)	25.874
SRR2967015	Control (Tissue:root)	27.123

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	15.986
SRR9715740	Leave	13.763
SRR9715741	Leave	17.010
SRR9715739	Root	7.463
SRR9715742	Root	20.040
SRR9715743	Root	18.392

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.372
SRR8749028	MeJA induced 9h	29.029
SRR8749029	MeJA induced 9h	13.280
SRR8749030	Uninduced	8.325
SRR8749031	Uninduced	5.187
SRR8749032	Uninduced	4.417

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	24.176
SRR8400027	Control-Root	25.184