Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur000180s00014083.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G26850.1	2.00E-40	F-box family protein
NR	KHN32241.1	4.57E-110	F-box protein [Glycine soja]
Swissprot	tr\|Q8RY82\|FB121_ARATH	2.00E-47	F-box protein At2g32560
trEMBL	tr\|I1LA81\|I1LA81_SOYBN	2.00E-106	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G18630.1}

Sequence

Transcript Sequence

>Glyur000180s00014083.1
ATGGAGAATAATATCAAAGAAGGTGGTAACATGTCCCTCTTGGATTTGCCTGAAACAACTTTGGATTTCATCCTCAAACTCCTTTCACCAATAGAGCTCTGCACAATGTCAAAAGTGTGTACTTCTCTAAGNGATAGATGCCAAAGTGATCATGTATGGGAAAACCACGTAAAGCAGAAATGGGGCAGAGTGATTGGTGATGCTGCTTATAAGGAGTGGCAATTGCATATANCCACTGCAAAAGAAGGGAACCTCTTGAATCAAAGGACCAATCTGAATGGATCATTGGGTTCTTTTACTGGTGTTTGGCCTAATCTGTATCTGTGTTCTTACTTGGAAGATTGTTCACTCCTCAGTGATAGGTTAATCGTGGAGTTCAAGCAATATCCCGTAGAATCAAACATGAGACGAATACCATTATCTAGAAAAAATGGGGAACAAGGTCATCGATCAGGTGGATACTATGGAGGAATTAGAAAGCTTCACAATCAAGATGAGATTGAAACATGGAAGAAGCTCTTCCCACGTCAAATTCAGAATGTCAAAAAAGGTGGTAACATGTCCCTTTTGGATTTGCCTGAAACGACTTTGGATTTCATCCTCAAACTCCTTTCACCAATAGAGCTCTGCACAATGTCAAAAGTGTGTACTTGTCTAAGGGATAGATGTCAAAGTGATCATTTGTGGGAAAACCATGTAAAGCAGAAATGGGGCAGAGTGATTGGTGATGCTGCTTATAAGGAGTGGCAATTACATATAACCAATGCAAAAGCAGGGAACCTCTTGAATCTAAATGGATCATTGGGCTCTTTTACTGGTGTTTGGCCTAATCTGTATCTGTGTTCTTACTTGGAAGATTGTTCACTCCTCAGTGGTCAACTGTCAAACCACTTCATGATGTCTTTAGTGGTAGGTTCTGGTTTCCTGCTCAGGTCTACAAGGTATCAATGTGGTGGTTGGCAAATTCTAGGGAAGATCTTGGAATGGGATATGGTGAGAGTGTTGGCAGTTGTTTCCTCTCCATATGTTATGCATCTCTCTGATTGTTTGGATGACTTGAAACCGGGGGATCATATTGAAATCCAATGGAGAGGAAGAAATACACAAACTCCTTATGATACGTTGATCGTGGAGTTCAAACAATACTCACAACGATCATACATGAGACGAATAACGTTATCTAGAAAGAATGGGGAACAAGGTGATCGAATAGGCGGGTTCTATGGAGGAATTAGAAAGCTTCACAATCAGGATGAGATTGAGACATGGAAGAAACTCTTCCAACGTCAAATTCAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00180	253306	265194	+

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000180s00014083.1	PF00646.28	F-box	11	54	9.00E-06
Glyur000180s00014083.1	PF00646.28	F-box	187	231	2.20E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.730
SRR1783600	control	0.730
SRR1783602	moderate drought stress	0.614
SRR1811619	moderate drought stress	0.477

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.154
DRR006520	Root Summer glycyrrhizin high producing strain	0.246
DRR006521	Root Winter glycyrrhizin high producing strain	0.396
DRR006522	Root Winter glycyrrhizin high producing strain	0.240
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.084
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.108
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.066

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.629
SRR2868004	Drought Stress(Tissue:root)	1.227
SRR2967015	Control (Tissue:root)	0.755

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.387
SRR9715740	Leave	0.092
SRR9715741	Leave	0.199
SRR9715739	Root	0.297
SRR9715742	Root	0.343
SRR9715743	Root	0.561

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.143
SRR8749028	MeJA induced 9h	0.119
SRR8749029	MeJA induced 9h	0.154
SRR8749030	Uninduced	0.331
SRR8749031	Uninduced	0.114
SRR8749032	Uninduced	0.045

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.981
SRR8400027	Control-Root	0.912