Gene detail information of Glyur000181s00013075.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G22760.1 | 0 | PHD finger family protein |
| NR | XP_003539448.1 | 0 | PREDICTED: uncharacterized protein LOC100808614 isoform X1 [Glycine max] |
| Swissprot | tr|F4KBP5|CHR4_ARATH | 3.00E-09 | Protein CHROMATIN REMODELING 4 {ECO:0000303|PubMed:16547115} |
| trEMBL | tr|I1LTQ6|I1LTQ6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G30530.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00181 | 14247 | 23509 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | DDT |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000181s00013075.1 | PF02791.12 | DDT | 197 | 255 | 2.70E-11 |
| Glyur000181s00013075.1 | PF00628.24 | PHD | 421 | 464 | 1.40E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.262 |
| SRR1783600 | control | 5.257 |
| SRR1783602 | moderate drought stress | 4.458 |
| SRR1811619 | moderate drought stress | 4.386 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.418 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.254 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.245 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.209 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.891 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.942 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.886 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.926 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 15.702 |
| SRR2868004 | Drought Stress(Tissue:root) | 17.272 |
| SRR2967015 | Control (Tissue:root) | 17.707 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 8.436 |
| SRR9715740 | Leave | 10.053 |
| SRR9715741 | Leave | 9.307 |
| SRR9715739 | Root | 1.564 |
| SRR9715742 | Root | 10.745 |
| SRR9715743 | Root | 9.028 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.731 |
| SRR8749028 | MeJA induced 9h | 6.432 |
| SRR8749029 | MeJA induced 9h | 2.194 |
| SRR8749030 | Uninduced | 3.683 |
| SRR8749031 | Uninduced | 3.815 |
| SRR8749032 | Uninduced | 2.276 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 13.835 |
| SRR8400027 | Control-Root | 14.053 |