Gene detail information of Glyur000181s00013080.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G22740.1 | 0 | cellulose synthase-like A02 |
| NR | XP_003538146.1 | 0 | PREDICTED: glucomannan 4-beta-mannosyltransferase 2-like [Glycine max] |
| COG | YP_004055443.1 | 4.00E-68 | family 2 glycosyl transferase [Marivirga tractuosa DSM 4126] |
| Swissprot | tr|Q9FNI7|CSLA2_ARATH | 0 | Glucomannan 4-beta-mannosyltransferase 2 |
| trEMBL | tr|I1LKW4|I1LKW4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G19490.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00181 | 78052 | 83855 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000181s00013080.1 | PF13641.1 | Glyco_tranf_2_3 | 100 | 333 | 3.70E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 98.481 |
| SRR1783600 | control | 98.303 |
| SRR1783602 | moderate drought stress | 62.138 |
| SRR1811619 | moderate drought stress | 62.222 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 50.196 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 50.254 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.608 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.438 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 24.667 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 24.697 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 24.084 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 23.897 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 180.147 |
| SRR2868004 | Drought Stress(Tissue:root) | 96.246 |
| SRR2967015 | Control (Tissue:root) | 126.614 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 34.585 |
| SRR9715740 | Leave | 3.167 |
| SRR9715741 | Leave | 7.460 |
| SRR9715739 | Root | 46.984 |
| SRR9715742 | Root | 90.399 |
| SRR9715743 | Root | 80.428 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 34.107 |
| SRR8749028 | MeJA induced 9h | 13.295 |
| SRR8749029 | MeJA induced 9h | 23.268 |
| SRR8749030 | Uninduced | 0.608 |
| SRR8749031 | Uninduced | 0.446 |
| SRR8749032 | Uninduced | 3.140 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 175.905 |
| SRR8400027 | Control-Root | 219.555 |