Gene detail

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Gene detail information of Glyur000181s00013083.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G03740.1	2.00E-23	histone deacetylase 2C
NR	NP_001235884.1	2.26E-122	histone deacetylase HDT1 [Glycine max]
Swissprot	tr\|Q8LJS2\|HDT1_SOYBN	1.00E-124	Histone deacetylase HDT1
trEMBL	tr\|I1LRC2\|I1LRC2_SOYBN	1.00E-125	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G09000.1}

Sequence

Transcript Sequence

>Glyur000181s00013083.1
GCAATATAAATATTAAACCCTTAAACCCATTTTTTGTTTTCAAACCGAGAGCTTCTCTTCCTTCCAGTGTTGTAGTTGCAGCTTCCCTTGCTCGCGCCTCTCAACTCTCGCTCTCCCTTCGAAATGGAAGCTCCAATGGAGTTCTGGGGTGTTGAGGTTAAGGTGGCGCAGACGGTTAAAGTTGACCCAGCGGATCCAATTGATGGATACATTCACGTTTCTCAGGTTGCACTTGGGGAGGCGAAGAAAGACAAAGCAAGTGAACCTGTGGTTCTGTACTTGAAAGTTGATGGCCAGAAGCTTGTCTTGGGAACTCTTTCTAGGGATGACTTCCCTCATCTCTCTTTGGATATAGTTCTAGACAAGGAGTCTGAGCTCTCCCACAATTCAAAAACTGCTAGTGTTTATTTTTGTGGATACAAAGTTATCCATGACGATGAGGATATTTCTGACTTTTCTGATAGTGATGATGATCTTGCATTGATGGACCAAGAAAATGGAAAACCTGAAACAAAAGCTGAAGTTGCAAAGGTTAGTAAATCTGGAAAACCTGTGACTGGTGCATCAGCAAAACAAGTCAAGATTGTTGATCCAAAGAAAGATGAAGATGAATCTGATGATGAGTCTGTGGATGAAGATGAATTTTCTGACGAGATGGATGCTGATAATGATAGTGATGAAGAGNGTGAGAGTGATGAAGATGATGAAGAGACCCCGGCTAAGAAGGTGAATCAGGGCAAGAAGAGACCCAATGAGTCTGCATCAAAAACTCCAGTTCCTACCAAGAAAGCTAAAAATGCTACTCCTGAAAAGACTGATGGTAAGAAAGGTGTACATACAGCAACTCCTCACCCTATGAAGAAGGGTGGAAAAACTCCCAACAGTGTTGCAAAGGACAAGACTCCCAATTCTGGTGGACAACTATCTTGCCAAAGTTGTAACAAGTCTTTCACCTCCGAAAGTGGTTTTCAACAACATAAACAGGCGAAGCATGGNGGAAAGTGATGTTGCATTTATTACCGTATTCATGTGGTAATTTTCCCGTGCATTACAGTGAGTATGGTAAAAACATTCATATTTTATCCTCTCTTTTAGGCTANTAAACGGTGGAAGGTTTAAGGCGAACACATGGTTTGGGAATTTTGTTTTGTTATTGCTGAGTCTCTATATATTAAAATTGTCGCGTTTGAATCTTGTTATTTAGCAATTCAATGAATGAGTGCTTCGAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00181	94909	98079	-

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000181s00013083.1	PF12874.2	zf-met	268	289	0.00049

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	41.356
SRR1783600	control	41.426
SRR1783602	moderate drought stress	45.012
SRR1811619	moderate drought stress	45.409

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	102.070
DRR006520	Root Summer glycyrrhizin high producing strain	100.188
DRR006521	Root Winter glycyrrhizin high producing strain	20.890
DRR006522	Root Winter glycyrrhizin high producing strain	20.310
DRR006523	Root Summer glycyrrhizin low producing strain	89.244
DRR006524	Root Summer glycyrrhizin low producing strain	87.488
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.817
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.607

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	116.356
SRR2868004	Drought Stress(Tissue:root)	54.754
SRR2967015	Control (Tissue:root)	48.210

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	17.082
SRR9715740	Leave	24.643
SRR9715741	Leave	12.587
SRR9715739	Root	4.599
SRR9715742	Root	31.550
SRR9715743	Root	22.896

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	222.480
SRR8749028	MeJA induced 9h	56.631
SRR8749029	MeJA induced 9h	131.533
SRR8749030	Uninduced	6.176
SRR8749031	Uninduced	2.539
SRR8749032	Uninduced	9.418

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	66.166
SRR8400027	Control-Root	47.520