Gene detail information of Glyur000181s00013087.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT1G08250.1 | 2.00E-171 | arogenate dehydratase 6 |
NR | XP_003540785.1 | 0 | PREDICTED: arogenate dehydratase/prephenate dehydratase 6, chloroplastic-like [Glycine max] |
COG | YP_004172970.1 | 5.00E-81 | prephenate dehydratase [Anaerolinea thermophila UNI-1] |
Swissprot | tr|Q9SGD6|AROD6_ARATH | 0 | Arogenate dehydratase/prephenate dehydratase 6, chloroplastic (Precursor) |
trEMBL | tr|I1LRC6|I1LRC6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G09050.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00181 | 130477 | 131760 | - |
Gene family
Gene family | subfamily |
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-- | -- |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K05359 | ADT, PDT | EC:4.2.1.91 4.2.1.51 | Biosynthesis of amino acids | map01230 |
Phenylalanine, tyrosine and tryptophan biosynthesis | map00400 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000181s00013087.1 | PF00800.13 | PDT | 128 | 306 | 3.90E-59 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 19.676 |
SRR1783600 | control | 19.476 |
SRR1783602 | moderate drought stress | 23.825 |
SRR1811619 | moderate drought stress | 27.716 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 21.857 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 21.193 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 4.562 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 4.703 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 32.278 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 34.708 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.205 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.065 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 32.535 |
SRR2868004 | Drought Stress(Tissue:root) | 55.594 |
SRR2967015 | Control (Tissue:root) | 36.687 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 66.989 |
SRR9715740 | Leave | 41.212 |
SRR9715741 | Leave | 73.408 |
SRR9715739 | Root | 78.636 |
SRR9715742 | Root | 109.996 |
SRR9715743 | Root | 104.904 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 13.461 |
SRR8749028 | MeJA induced 9h | 11.491 |
SRR8749029 | MeJA induced 9h | 10.510 |
SRR8749030 | Uninduced | 41.690 |
SRR8749031 | Uninduced | 16.397 |
SRR8749032 | Uninduced | 18.396 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 34.263 |
SRR8400027 | Control-Root | 27.683 |