Gene detail information of Glyur000181s00013107.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G08260.10DNA polymerase epsilon catalytic subunit
NRXP_004505995.10PREDICTED: DNA polymerase epsilon catalytic subunit A-like [Cicer arietinum]
COGNP_577941.16.00E-22DNA-directed DNA polymerase [Pyrococcus furiosus DSM 3638]
Swissprottr|F4HW04|DPOE1_ARATH0DNA polymerase epsilon catalytic subunit A
trEMBLtr|G7JKW4|G7JKW4_MEDTR0DNA polymerase {ECO:0000256|RuleBase:RU000442}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00181222946249427+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02324POLE1 EC:2.7.7.7 Purine metabolism map00230
Pyrimidine metabolismmap00240
DNA replicationmap03030
Base excision repairmap03410
Nucleotide excision repairmap03420
HTLV-I infectionmap05166


Gene Ontology

biological_process

GO:0006260  DNA replication

GO:0006281  DNA repair


cellular_component

GO:0005634  nucleus

GO:0008622  epsilon DNA polymerase complex


molecular_function

GO:0000166  nucleotide binding

GO:0003676  nucleic acid binding

GO:0003677  DNA binding

GO:0003887  DNA-directed DNA polymerase activity

GO:0008270  zinc ion binding

GO:0008408  3'-5' exonuclease activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000181s00013107.1PF03104.14DNA_pol_B_exo1743931.90E-66
Glyur000181s00013107.1PF00136.16DNA_pol_B58910725.20E-22
Glyur000181s00013107.1PF08490.7DUF1744153217724.90E-65


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control4.381
SRR1783600control4.450
SRR1783602moderate drought stress6.659
SRR1811619moderate drought stress6.611

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.028
DRR006520Root Summer glycyrrhizin high producing strain3.094
DRR006521Root Winter glycyrrhizin high producing strain2.692
DRR006522Root Winter glycyrrhizin high producing strain2.697
DRR006523Root Summer glycyrrhizin low producing strain3.664
DRR006524Root Summer glycyrrhizin low producing strain3.619
DRR006525Leaf Summer glycyrrhizin high producing strain0.895
DRR006526Leaf Summer glycyrrhizin high producing strain0.855

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)9.472
SRR2868004Drought Stress(Tissue:root)6.027
SRR2967015Control (Tissue:root)6.908

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.629
SRR9715740Leave2.162
SRR9715741Leave5.097
SRR9715739Root1.499
SRR9715742Root7.158
SRR9715743Root6.212

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.423
SRR8749028MeJA induced 9h7.140
SRR8749029MeJA induced 9h4.083
SRR8749030Uninduced0.435
SRR8749031Uninduced0.897
SRR8749032Uninduced0.757

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root13.089
SRR8400027Control-Root14.694

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved