Gene detail information of Glyur000182s00014535.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G18070.2 | 3.00E-50 | beta glucosidase 43 |
| NR | XP_006582227.1 | 8.50E-96 | PREDICTED: beta-glucosidase 25-like isoform X5 [Glycine max] |
| COG | YP_004449345.1 | 3.00E-50 | beta-galactosidase [Haliscomenobacter hydrossis DSM 1100] |
| Swissprot | tr|Q7XSK0|BGL18_ORYSJ | 2.00E-63 | Beta-glucosidase 18 (Precursor) |
| trEMBL | tr|N1QU62|N1QU62_AEGTA | 1.00E-84 | Beta-glucosidase 44 {ECO:0000313|EMBL:EMT02092.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00182 | 177578 | 186761 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K05350 | bglB | EC:3.2.1.21 | Starch and sucrose metabolism | map00500 |
| Cyanoamino acid metabolism | map00460 | |||
| Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000182s00014535.1 | PF00232.13 | Glyco_hydro_1 | 39 | 97 | 1.40E-23 |
| Glyur000182s00014535.1 | PF00232.13 | Glyco_hydro_1 | 136 | 271 | 2.60E-62 |
| Glyur000182s00014535.1 | PF00232.13 | Glyco_hydro_1 | 275 | 324 | 1.60E-08 |
| Glyur000182s00014535.1 | PF00232.13 | Glyco_hydro_1 | 362 | 457 | 3.80E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.009 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.141 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.207 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.060 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.034 |
| SRR2967015 | Control (Tissue:root) | 0.001 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.031 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.027 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.033 |
| SRR8400027 | Control-Root | 0.019 |