Gene detail information of Glyur000182s00014544.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G15470.10Transducin/WD40 repeat-like superfamily protein
NRXP_004487750.10PREDICTED: uncharacterized protein LOC101506788 [Cicer arietinum]
COGYP_007125556.13.00E-18WD40 repeat-containing protein [Microcoleus sp. PCC 7113]
Swissprottr|Q6S7B0|TAF5_ARATH1.00E-09Transcription initiation factor TFIID subunit 5
trEMBLtr|A0A072VAE7|A0A072VAE7_MEDTR0Transducin/WD-like repeat-protein {ECO:0000313|EMBL:KEH38772.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00182244346250372+


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000182s00014544.1PF00400.27WD403954282.50E-09
Glyur000182s00014544.1PF00400.27WD405105468.40E-09
Glyur000182s00014544.1PF00400.27WD405575881.20E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control14.355
SRR1783600control14.294
SRR1783602moderate drought stress15.107
SRR1811619moderate drought stress14.928

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.815
DRR006520Root Summer glycyrrhizin high producing strain5.861
DRR006521Root Winter glycyrrhizin high producing strain8.681
DRR006522Root Winter glycyrrhizin high producing strain8.523
DRR006523Root Summer glycyrrhizin low producing strain5.994
DRR006524Root Summer glycyrrhizin low producing strain5.875
DRR006525Leaf Summer glycyrrhizin high producing strain6.999
DRR006526Leaf Summer glycyrrhizin high producing strain6.816

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)25.934
SRR2868004Drought Stress(Tissue:root)27.356
SRR2967015Control (Tissue:root)24.801

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.460
SRR9715740Leave9.125
SRR9715741Leave11.023
SRR9715739Root3.145
SRR9715742Root16.744
SRR9715743Root14.544

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h8.809
SRR8749028MeJA induced 9h14.971
SRR8749029MeJA induced 9h6.872
SRR8749030Uninduced3.999
SRR8749031Uninduced1.327
SRR8749032Uninduced2.144

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root28.510
SRR8400027Control-Root24.769

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved