Gene detail

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Gene detail information of Glyur000182s00014545.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G54190.1	1.00E-169	protochlorophyllide oxidoreductase A
NR	XP_007149605.1	0	hypothetical protein PHAVU_005G083700g [Phaseolus vulgaris]
COG	YP_007155133.1	2.00E-145	light-dependent protochlorophyllide reductase [Anabaena cylindrica PCC 7122]
Swissprot	tr\|Q41249\|PORA_CUCSA	0	Protochlorophyllide reductase, chloroplastic (Precursor)
trEMBL	tr\|V7BUE6\|V7BUE6_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW21599.1}

Sequence

Transcript Sequence

>Glyur000182s00014545.1
CTCATGTCTGATCCACATTTCTTATTACTTACCACAGTGGTAATAACACCACTCCAACAACTAGCTGGATTTGCTTGCTTGCTAAGAAGTGGTACATTGTAAAACCAATTTTTTGCTAAGTTCCAATGGCTCTCCAGGCTGCTTCTTTGGTTCCTGCTTCTTTCTCCATTCCTAAAGAGGGGAAGTCTAGTGTTTCTCTCAAGGACACCACCTTCTTTGGTCTTCCATTGTCCGAACCTTTCAAAGCTGACTTCAGCTCTTCTGCATTGAGGTGCAAGAGGGAATTCAGACAAAAAGTTGGTGCTGTGAGGGCAGAGACAGTGGCTACAGCCACTCCAGCAGTTAACAAGTCTGCAGGAGAAGGCAAGAAAACATTGAGGAAAGGCACTGTTGTGATCACTGGGGCTTCTTCTGGATTAGGCCTTGCCACTGCTAAGGCCTTGGCTGAGACAGGAAAATGGCATGTAGTAATGGCCTGCAGGGATTTCCTCAAAGCTGCAAGAGCAGCAAAATCTGCTGGCATGGCCAAGGAAAACTACTCCATCATGCACTTAGACCTTTCCTCTCTCGACAGCGTGCGCCAATTCGTTGATAACCTGAAGCGAACAGGCATGCCGCTAGATGTGCTGGTTTGCAATGCTGCTGTTTACTTGCCAACTGCTAAGGAGCCTAGATTCACTGCTGAAGGCTTTGAACTCAGTGTTGGGACAAACCATCTGGGGCATTTCCTCCTTGCACGCCTGTTGCTCGACGACATGAACAAATCCGATTACCCTTCGAAGCGCTTGATCATTGTTGGCTCAATCACAGGTAACACAAACACATTGGCTGGAAATGTACCTCCAAAGGCTAACCTTGGTGATTTGAGGGGACTTGCCGGCGGCTTGAACGGGCTCAACAGTTCAGCCATGATAGATGGTGGAGACTTTGATGGTGCCAAGGCATACAAGGACAGCAAAGTCTGCAACATGCTCACAATGCAAGAGTTCCACAGGAGATACCATGAGGAAACTGGGATCACATTTGCTTCCCTTTACCCGGGTTGCATCGCCACAACAGGCTTGTTCAGAGAGCACATTCCCTTGTTCAGAACTCTATTCCCTCCATTCCAAAAGTACATAACCAAAGGATATGTCTCAGAAGATGATGCAGGAAAGAGACTTGCTCAGGTTGTGAGTGATCCAAGCCTAACAAAATCTGGGGTTTACTGGAGCTGGAACAAAGCCTCTGCTTCCTTTGAAAACCAGTTATCCCAAGAGGCCAGCGATGTAGAGAAGGCTCGCAAGGTGTGGGAGATTAGTGAGAAACTCGTTGGTTTGGCCTAATGTGGGAGCCTCCAACATCCATGTTGAGTAAGAGGCCTTACCATGGAGAAAAATGACACCTCAGAAGAGTGAAAATGCCATCATGTTATGTGGAGTGCGTTGATGTTGTTTTGTTAGCTAGGAACTTTTTTTGCCTTGTAGGAGTCTATCGATGACTCAATAAAATCATTCAACCATGTGGCAAAGTGCTTATAAACTTTCTAAGAAATAACTGTGCATATAGTGACTACAAATTGAAGTGTGGGGGTGTTCTTCGTTAACTACCTTGGTTCAGCATATGAATTTTTTATTGAATTTTCCTTGAATTTTTCAACTAAAGGTCTACGTTAACTCCGGAGTAAATGCTTTAAACTAAGATCTTGCTTCATAAAAAAGCAACTGTGCAGGCCTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00182	251897	254239	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00218	por	EC:1.3.1.33	Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0055114 oxidation-reduction process

molecular_function GO:0016491 oxidoreductase activity GO:0016630 protochlorophyllide reductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000182s00014545.1	PF00106.20	adh_short	87	229	1.20E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.540
SRR1783600	control	0.505
SRR1783602	moderate drought stress	0.635
SRR1811619	moderate drought stress	0.584

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.928
DRR006520	Root Summer glycyrrhizin high producing strain	11.699
DRR006521	Root Winter glycyrrhizin high producing strain	1.090
DRR006522	Root Winter glycyrrhizin high producing strain	1.110
DRR006523	Root Summer glycyrrhizin low producing strain	7.261
DRR006524	Root Summer glycyrrhizin low producing strain	7.148
DRR006525	Leaf Summer glycyrrhizin high producing strain	510.579
DRR006526	Leaf Summer glycyrrhizin high producing strain	509.669

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	48.015
SRR2868004	Drought Stress(Tissue:root)	38.500
SRR2967015	Control (Tissue:root)	16.081

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	325.241
SRR9715740	Leave	342.394
SRR9715741	Leave	225.115
SRR9715739	Root	0.780
SRR9715742	Root	7.163
SRR9715743	Root	5.802

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	49.724
SRR8749028	MeJA induced 9h	78.244
SRR8749029	MeJA induced 9h	32.963
SRR8749030	Uninduced	29.890
SRR8749031	Uninduced	4.632
SRR8749032	Uninduced	12.448

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	24.123
SRR8400027	Control-Root	18.681