Gene detail information of Glyur000183s00013022.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G18240.1 | 0 | starch synthase 4 |
| NR | KHN25877.1 | 0 | Glycogen synthase [Glycine soja] |
| COG | YP_008595.1 | 7.00E-161 | glycogen synthase [Candidatus Protochlamydia amoebophila UWE25] |
| Swissprot | tr|Q0WVX5|SSY4_ARATH | 0 | Probable starch synthase 4, chloroplastic/amyloplastic (Precursor) |
| trEMBL | tr|I1K307|I1K307_SOYBN | 0 | Starch synthase, chloroplastic/amyloplastic {ECO:0000256|RuleBase:RU361232} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00183 | 34278 | 44324 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT5 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000183s00013022.1 | PF08323.6 | Glyco_transf_5 | 370 | 610 | 1.20E-65 |
| Glyur000183s00013022.1 | PF00534.15 | Glycos_transf_1 | 667 | 788 | 9.00E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.456 |
| SRR1783600 | control | 3.523 |
| SRR1783602 | moderate drought stress | 3.699 |
| SRR1811619 | moderate drought stress | 3.689 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.543 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.320 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.667 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.629 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.020 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.904 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.930 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.077 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.148 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.358 |
| SRR2967015 | Control (Tissue:root) | 9.421 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 9.672 |
| SRR9715740 | Leave | 13.898 |
| SRR9715741 | Leave | 10.279 |
| SRR9715739 | Root | 0.443 |
| SRR9715742 | Root | 2.518 |
| SRR9715743 | Root | 2.460 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.910 |
| SRR8749028 | MeJA induced 9h | 2.666 |
| SRR8749029 | MeJA induced 9h | 2.050 |
| SRR8749030 | Uninduced | 2.258 |
| SRR8749031 | Uninduced | 1.614 |
| SRR8749032 | Uninduced | 1.091 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.219 |
| SRR8400027 | Control-Root | 7.963 |