Gene detail

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Gene detail information of Glyur000183s00013026.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G18170.1	8.00E-41	WRKY DNA-binding protein 28
NR	XP_003524110.1	1.92E-102	PREDICTED: probable WRKY transcription factor 28-like [Glycine max]
Swissprot	tr\|Q8VWJ2\|WRK28_ARATH	3.00E-65	Probable WRKY transcription factor 28
trEMBL	tr\|I1K304\|I1K304_SOYBN	7.00E-103	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G25770.1}

Sequence

Transcript Sequence

>Glyur000183s00013026.1
ATGGGGATGAGGACAGCAAGGGAGCGAAAGCCTGAAGTAGGGAAAACCGGGAAAGTGAGTAGTGGAGAAAGGGGAGAAGATTCTCGAAAAAAGACGATGCTGACGTTGGCTCCCCATCAGCAGGACAAAGCCAGAGACCGTCTTCTCCACGTGCCTCGCACTGTGTCGGCTACGGTCAAATGCCGGTGCCAGTCTCAGACACGTGTGACCCTCCCTTCCATTATTCCCAAACCAAAGATCGGCACAGAAGGATCCATGTACTGTGATCAGAAGCAATTATTTTCTTCCTTATCAGCAGCATATGATTCATCACAATTAGCCTTTGATCCATCATCATATATGAGTTTCACCGAATGTTTGCAAGGAGGAGGAGGAGGCATGGACTACAATTCACTAATTGCAACTTCTTTTGGCTTGTCTCCTTCTTCATCAGAGGTGTTTTCATCTGTTGAAGGAAACCATCATCATCATCATCATCAAAAGACTCCTGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGGAGAAGAAGATCATAATATGGGTGATGGTGGTACTACTGGTGGCGGTGGTGCAGCAGGCAGTGAAACCCTTCTTAACTCATCTATCTCTTCCTCATCCACTGAAGCTGGGGCAGAAGAAGATTCAGGGAAGAGAAAGAAAGATGGCAAGGTGAAAGAAGAACAGAGCTCTAAGAATGGGAGCATTAAGGAGAAGAAGAAAGGGGAGAAGAAGCAGAAGGAACCGAGGTTTGCGTTCATGACAAAGAGTGAGGTTGATCACCTAGAAGATGGATACAGATGGAGAAAATATGGACAGAAAGCCGTCAAGAATAGCCCTTACCCTAGGAGCTACTACAGGTGCACAACCCAGAAGTGTACGGTGAAGAAACGCGTGGAGAGGTCATTTGAGGACCCAACCACTGTGATAACAACGTATGAAGGTCAGCACAACCATCCCGTCCCCACTTCCCTTAGGGGCAGCAATGCGGCTGCAGGAATCATGTTCACACCCGCCCCTTTGCTATCCACACCCACCCCACTCTCTCTCTCTCCATCTGCCGGGTCAAACTTCCCTCACCATCTCCTTCTCCACATGCACCAGCATACTAATACTAATTATAATCCTCACCACCACCACCACCACCACCTCACAAACACAAACACAAACACAAACACTAGTTATACACCTGCTCCTTCCGCTTCCGCTGCCTCCTCCTCCAGTTTTTATTCACACAACAACAACATTCACAACTCTCTTCTCCATCATCAGCTTCCTCCTGATCAATATGGCCTCCTTCAAGACATTGTCCCTTCCATGTTCCTCAACAACACCCACCACAACTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00183	67624	72606	-

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000183s00013026.1	PF03106.10	WRKY	263	320	5.90E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.788
SRR1783600	control	4.835
SRR1783602	moderate drought stress	7.221
SRR1811619	moderate drought stress	7.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.639
DRR006520	Root Summer glycyrrhizin high producing strain	0.977
DRR006521	Root Winter glycyrrhizin high producing strain	0.466
DRR006522	Root Winter glycyrrhizin high producing strain	0.404
DRR006523	Root Summer glycyrrhizin low producing strain	1.275
DRR006524	Root Summer glycyrrhizin low producing strain	1.141
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.069
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.206

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	3.094
SRR2868004	Drought Stress(Tissue:root)	6.022
SRR2967015	Control (Tissue:root)	3.254

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	3.840
SRR9715740	Leave	1.972
SRR9715741	Leave	5.241
SRR9715739	Root	8.518
SRR9715742	Root	3.889
SRR9715743	Root	3.510

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	82.827
SRR8749028	MeJA induced 9h	87.257
SRR8749029	MeJA induced 9h	49.930
SRR8749030	Uninduced	34.546
SRR8749031	Uninduced	27.103
SRR8749032	Uninduced	18.146

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	13.607
SRR8400027	Control-Root	7.945