Gene detail

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Gene detail information of Glyur000183s00013061.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G20820.1	2.00E-114	FAD-binding Berberine family protein
NR	XP_004504926.1	0	PREDICTED: cannabidiolic acid synthase-like 2-like [Cicer arietinum]
COG	YP_001698653.1	1.00E-27	reticuline oxidase [Lysinibacillus sphaericus C3-41]
Swissprot	tr\|Q8GTB6\|THCAS_CANSA	1.00E-143	Tetrahydrocannabinolic acid synthase (Precursor)
trEMBL	tr\|I1K2W8\|I1K2W8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G25460.1}

Sequence

Transcript Sequence

>Glyur000183s00013061.1
ATGACGCCTCTAAGCTCATATTTTGCTGTTGTTGCAATTGCTTTCTTGTTTTCAGTTGCATCTTCTACAGCTGATAATCATGAAAGCTTCGTTCAATGTCTTCAAAATTATTCCCATAATAATAACTCCACTTCAATCTCCAAGGTTGTTTACACCCAAACCAACTCCTCTTACATGTCTATATTGCGATTTTCCATTCAAAACCTGAGATTCACATCAAACACAACCACAATTCGAACTCGAAGTGGTGGGCATGACTACGAGGGTCTATCCTATGTTTCCCAAGTTCCATTTGTGCTATATATCCAAGTTGATGTAGAAAATAGCACTGCATGGGTTGAAGCAGGGGCAACTGTTAGTGAACTTTACTACAGCATTAGCCAGAAAAGCAAAACCCTTGGCTTCCCTGCAGGTGTTTGCTCCACTATGGGTGTTGGTGGACACATTAGTGGCGGTGGCTATGGATTCTTAATGCACAAATACGGTCTTGCTGCCGATAACATAATTGATGCTCGCATAATTGATGTGAAGGAAGCAATGGGTGAGGATCTGTTTTGGGCTATCAGAGGAGGTGGAGGAGCAAGCTTTGGAGTCATCAGAGCATGGAAGATAAGATTGGTTAATCCTGTTCCATCAAATGTGACAGTGTTCAGGGTTCCCAAGACATTGGAACAAAATGCAACCAAGCTTATTCACAAGTGGCAGCTTGTGGCAAATAAACTTGATGAGGACTTAACCATTAGGATCATCTTGGTGAGGGTAAATTCGAGTCAAACAAGGAAGCTAACAATACAAGCCACATTTGAATCTATGTTTCTTGGAGGTGTGGATAGGCTCCTTCCTTTGATGCAAGAGAGTTTCCCAAAGCTGGGATTGATTAGAGGAGACTGTACTGAGATGAGTTGGATTGAGTCAGTCCTCTACCTTGCTGGATTTACAAGTGATCAATCCCTTGAAGTTTTGCTCAATAGAACTCAAAGTGGTGTGTTGTTTTTGAAAGGGAAATCTGATTATGTAAGAGATCCTATTCCTGATGCTGGGTTAGAAGGGTTATGGCCAATGTTTTATCAAGATGAGGCCCAAGCTGCAGTGATGACACTCAATCCTTATGGAGGTAGAATGGATGAGATTTCGGAGTCTGAAATTCCATTCCCGCACAGAGCTGGAAACATTTACAAAATTCAGCACTTGGTTTATTGGCAAAAGGAAGGGGATGAGGTTGCACAAAGGCACATTAACTGGATTAGAAGATTGTACAATTATATGGAACCTTTTGTTTCAAAGTCTCCTAGAGCTGCATATGCCAATTATAGAGACCTTGACATTGGGGTGAATAACAACAATGGCTACACAAGCTATGGGCAAGCGAGCATTTGGGGTCTCAAGTATTTCAAGAACAACTTCAACAGATTGGCTAAAGTGAAGACCAAGCATGCTGAGGCACTCACTGGATACCTAGGGCTGTTCACGGGCGAGTTGGATCGGGTTTGGACAAATCATTATCCGAACCGATCGAAATAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00183	236229	238098	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	AA7

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function GO:0003824 catalytic activity GO:0008762 UDP-N-acetylmuramate dehydrogenase activity GO:0016491 oxidoreductase activity GO:0016614 oxidoreductase activity, acting on CH-OH group of donors GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000183s00013061.1	PF01565.18	FAD_binding_4	73	175	4.00E-18
Glyur000183s00013061.1	PF08031.7	BBE	433	477	2.50E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.015
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.053
DRR006524	Root Summer glycyrrhizin low producing strain	0.036
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.027
SRR2868004	Drought Stress(Tissue:root)	0.002
SRR2967015	Control (Tissue:root)	0.029

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.044
SRR9715740	Leave	0.021
SRR9715741	Leave	0.061
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.001
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.025
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.000
SRR8400027	Control-Root	0.043