Gene detail information of Glyur000183s00013064.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G37930.12.00E-52Protein with RING/U-box and TRAF-like domains
NRXP_004504728.17.75E-157PREDICTED: E3 ubiquitin-protein ligase SINA-like 10-like [Cicer arietinum]
Swissprottr|Q84K34|SIL10_ARATH3.00E-63E3 ubiquitin-protein ligase SINA-like 10
trEMBLtr|G8A1C0|G8A1C0_MEDTR1.00E-145E3 ubiquitin-protein ligase {ECO:0000256|RuleBase:RU201113}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00183245806248321-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K04506SIAH1 EC:2.3.2.27 Ubiquitin mediated proteolysis map04120
MAPK signaling pathway - flymap04013
Wnt signaling pathwaymap04310
p53 signaling pathwaymap04115


Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process

GO:0007275  multicellular organism development

GO:0016567  protein ubiquitination


cellular_component

GO:0005634  nucleus


molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005515  protein binding

GO:0008270  zinc ion binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000183s00013064.1PF03145.11Sina1362045.70E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control34.459
SRR1783600control34.526
SRR1783602moderate drought stress31.216
SRR1811619moderate drought stress30.703

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain29.131
DRR006520Root Summer glycyrrhizin high producing strain28.735
DRR006521Root Winter glycyrrhizin high producing strain37.248
DRR006522Root Winter glycyrrhizin high producing strain36.207
DRR006523Root Summer glycyrrhizin low producing strain34.660
DRR006524Root Summer glycyrrhizin low producing strain34.392
DRR006525Leaf Summer glycyrrhizin high producing strain24.748
DRR006526Leaf Summer glycyrrhizin high producing strain24.515

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)34.957
SRR2868004Drought Stress(Tissue:root)43.860
SRR2967015Control (Tissue:root)42.675

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave16.326
SRR9715740Leave21.374
SRR9715741Leave24.369
SRR9715739Root4.317
SRR9715742Root14.052
SRR9715743Root13.242

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h35.874
SRR8749028MeJA induced 9h32.698
SRR8749029MeJA induced 9h27.877
SRR8749030Uninduced28.034
SRR8749031Uninduced32.581
SRR8749032Uninduced35.889

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root33.158
SRR8400027Control-Root30.717

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved