Gene detail information of Glyur000184s00008172.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G16710.22.00E-43glycosyltransferase family protein 28
NRNP_001237879.11.46E-66uncharacterized protein LOC100527305 [Glycine max]
trEMBLtr|C6T3X6|C6T3X6_SOYBN5.00E-67Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G13540.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001844489748627+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K07432ALG13 EC:2.4.1.141 N-Glycan biosynthesis map00510
Various types of N-glycan biosynthesismap00513


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0030259  lipid glycosylation


molecular_function

GO:0003678  DNA helicase activity

GO:0005524  ATP binding

GO:0016758  transferase activity, transferring hexosyl groups

GO:0030246  carbohydrate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000184s00008172.1PF06068.8TIP49941563.70E-14
Glyur000184s00008172.1PF04101.11Glyco_tran_28_C2223228.80E-18


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.626
SRR1783600control3.444
SRR1783602moderate drought stress4.369
SRR1811619moderate drought stress4.354

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.193
DRR006520Root Summer glycyrrhizin high producing strain5.370
DRR006521Root Winter glycyrrhizin high producing strain4.522
DRR006522Root Winter glycyrrhizin high producing strain4.594
DRR006523Root Summer glycyrrhizin low producing strain3.477
DRR006524Root Summer glycyrrhizin low producing strain3.449
DRR006525Leaf Summer glycyrrhizin high producing strain1.616
DRR006526Leaf Summer glycyrrhizin high producing strain1.607

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)6.164
SRR2868004Drought Stress(Tissue:root)7.302
SRR2967015Control (Tissue:root)5.835

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.576
SRR9715740Leave6.106
SRR9715741Leave4.519
SRR9715739Root1.684
SRR9715742Root2.564
SRR9715743Root2.031

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.808
SRR8749028MeJA induced 9h1.431
SRR8749029MeJA induced 9h0.997
SRR8749030Uninduced1.189
SRR8749031Uninduced0.299
SRR8749032Uninduced0.282

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root8.915
SRR8400027Control-Root8.443

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved