Gene detail

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Gene detail information of Glyur000184s00008174.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G21480.1	2.00E-142	Exostosin family protein
NR	XP_004498379.1	0	PREDICTED: probable beta-1,4-xylosyltransferase IRX10-like [Cicer arietinum]
Swissprot	tr\|Q3E9A4\|GLYT5_ARATH	7.00E-13	Probable glycosyltransferase At5g20260
trEMBL	tr\|A0A072VFU8\|A0A072VFU8_MEDTR	0	Exostosin family protein {ECO:0000313\|EMBL:KEH40466.1}

Sequence

Transcript Sequence

>Glyur000184s00008174.1
TCGATTTTGGGGCTAAACGTGTGTTTCATAATCTTAACCAAACACACACACTACGCTCGCCACACTGCTTCCTGGAGCTTCTTCTTCTTCTTCTTCTATTTTCTCAAATCAAATGTGGAGCGCGAGCAGCAGCAACAAATCGAGGGCGATGCACCAGCAGCAGCCTCTATGCACCCGCACGCACCAGATCGGGTCCTTACTCCTAGTTGCGGCCACCTTCTTCTTCACGAGGCTATTGGACGCCCCTTGCAGGCTCTCCTCCTCCGCCAACGTGGCACGCGCGTCGTCGTCGTTGCAGCACAAGTTCCCTGAGTCNTCGGAAGTGTCCCTGAAGATCTACGTCTACGATGCAAACGAGATCGACGGCTTGAAGGAACTCTTGCAGGGAAGGGAGGGTAAGATCACACCCCAAGCTTGCTTGAAAGGCCAGTGGGGCACTCAGGTCTTAAGCCAAATGCCGTATTTTCGGTTATCTGGAGGCCGCAACCACATATTTTGGAGCTGGAGCTCACTTGTTCAAATCCTGGGCAACGGGGATCGCACTGATAAGAGAGATACTAGTGCCTTTAATACATGGAAAGATATAATCATTCCAGGAAATGTNGAGGATGGTATGACTAAAGCTGGGTCTACCATGGTCCAGCCTTTGCCTCTATCAAAGCGGAAGTACTTGGCAAATTATTTAGGACGTGCACAAGGAAAAGNTGGTCGTCTTAAGCTGATAGAGCTTTCAAAACAATTTCCAGAGAAGTTGGAATGTCCAGATTTGAAATTCAGTGGATCTGACAAGTTGGGAAGGAAAGAATATTTTGAACACTTGCGCAATTCCAAGTTTTGCCTGGCCCCACGTGGGGAGTCATCTTGGACACTTCGCTTCTACGAGTCTTTTTTTGTGGAATGTGTTCCAGTTATATTATCAGATCAGATAGAATTGCCTTTCCAGAATGTCATCGATTACAGTCAGATATCAATAAAATGGCCATCCAGTCGAACAGGTCCTCAACTATTGCAGTACTTGGAATCTATTCCAGATGAAGAAATAGAGGCAATGATAGCTCGCGGTCGACAAGTTAGGTGCTTTTGGATCTATGCTTCAGACTCAGAACCTTGTTCAGCAATGCGTGGAATTTTGTGGGAACTCCAAAGGAAAGTTAGGCAATTTCACCAATCAGCTGAAACATTTTGGTTGCACAATGCATCAATTGTAAACAGGAATTTGGTTGAATTTTCCAAATGGGAACTCCCTGTGCCTTTGCCTTGATAAGCTGGCATATATAGTTTTCTTGTATAAAGCATTCTTTGTTATAGCTATTATTATTCTTCCGGTCTTAATTCTTTACAAGGATATATTAGCTCTTGATTTTCGCCTGGTAATTTGATTATCACATAAAGCAAGATATTTGTATGTGGCTTTCCTGTGACGTGTCATTA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00184	55660	59172	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT47

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000184s00008174.1	PF03016.10	Exostosin	110	305	1.10E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.312
SRR1783600	control	11.312
SRR1783602	moderate drought stress	11.502
SRR1811619	moderate drought stress	11.486

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.323
DRR006520	Root Summer glycyrrhizin high producing strain	14.108
DRR006521	Root Winter glycyrrhizin high producing strain	8.818
DRR006522	Root Winter glycyrrhizin high producing strain	8.565
DRR006523	Root Summer glycyrrhizin low producing strain	16.454
DRR006524	Root Summer glycyrrhizin low producing strain	17.032
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.803
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.711

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	26.848
SRR2868004	Drought Stress(Tissue:root)	24.908
SRR2967015	Control (Tissue:root)	27.456

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	26.698
SRR9715740	Leave	21.225
SRR9715741	Leave	28.749
SRR9715739	Root	14.439
SRR9715742	Root	23.493
SRR9715743	Root	20.675

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.305
SRR8749028	MeJA induced 9h	12.211
SRR8749029	MeJA induced 9h	13.364
SRR8749030	Uninduced	9.988
SRR8749031	Uninduced	4.580
SRR8749032	Uninduced	5.706

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	28.028
SRR8400027	Control-Root	33.224