Gene detail information of Glyur000184s00008188.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G01780.1 | 7.00E-75 | GATA type zinc finger transcription factor family protein |
| NR | XP_007135026.1 | 4.10E-118 | hypothetical protein PHAVU_010G095700g [Phaseolus vulgaris] |
| Swissprot | tr|Q500W4|PLI2C_ARATH | 4.00E-96 | LIM domain-containing protein PLIM2c {ECO:0000305} |
| trEMBL | tr|V7ANY0|V7ANY0_PHAVU | 2.00E-118 | Uncharacterized protein {ECO:0000313|EMBL:ESW07020.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00184 | 140073 | 141859 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LIM |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000184s00008188.1 | PF00412.17 | LIM | 33 | 88 | 7.50E-11 |
| Glyur000184s00008188.1 | PF00412.17 | LIM | 132 | 175 | 2.60E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.056 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.184 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.185 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.210 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.211 |
| SRR2967015 | Control (Tissue:root) | 0.211 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.243 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.057 |
| SRR9715742 | Root | 0.067 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.956 |
| SRR8749028 | MeJA induced 9h | 0.283 |
| SRR8749029 | MeJA induced 9h | 0.610 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.021 |
| SRR8400027 | Control-Root | 0.046 |