Gene detail information of Glyur000184s00008199.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G00660.20RNAhelicase-like 8
NRXP_006583310.10PREDICTED: DEAD-box ATP-dependent RNA helicase 8-like isoform X2 [Glycine max]
COGYP_003640197.14.00E-83DEAD/DEAH box helicase [Thermincola potens JR]
Swissprottr|Q7XMK8|RH6_ORYSJ0DEAD-box ATP-dependent RNA helicase 6
trEMBLtr|I1KID2|I1KID2_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G07950.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00184179348187801-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12614DDX6, RCK, DHH1 EC:3.6.4.13 RNA degradation map03018


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000184s00008199.1PF00270.24DEAD2394035.20E-43
Glyur000184s00008199.1PF00271.26Helicase_C4715465.60E-25


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control12.793
SRR1783600control12.922
SRR1783602moderate drought stress11.378
SRR1811619moderate drought stress11.182

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain15.102
DRR006520Root Summer glycyrrhizin high producing strain15.192
DRR006521Root Winter glycyrrhizin high producing strain8.311
DRR006522Root Winter glycyrrhizin high producing strain7.997
DRR006523Root Summer glycyrrhizin low producing strain13.092
DRR006524Root Summer glycyrrhizin low producing strain13.030
DRR006525Leaf Summer glycyrrhizin high producing strain9.255
DRR006526Leaf Summer glycyrrhizin high producing strain9.089

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)23.243
SRR2868004Drought Stress(Tissue:root)19.845
SRR2967015Control (Tissue:root)19.277

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave16.259
SRR9715740Leave17.831
SRR9715741Leave17.285
SRR9715739Root6.567
SRR9715742Root14.728
SRR9715743Root13.785

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h19.727
SRR8749028MeJA induced 9h16.617
SRR8749029MeJA induced 9h9.598
SRR8749030Uninduced7.342
SRR8749031Uninduced4.671
SRR8749032Uninduced3.580

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root23.743
SRR8400027Control-Root24.218

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved