Gene detail information of Glyur000186s00009854.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G54690.16.00E-138Sugar isomerase (SIS) family protein
NRXP_004493784.10PREDICTED: probable arabinose 5-phosphate isomerase-like [Cicer arietinum]
COGYP_004650920.11.00E-106hypothetical protein PUV_01160 [Parachlamydia acanthamoebae UV-7]
Swissprottr|Q9M1T1|SETH3_ARATH0Probable arabinose 5-phosphate isomerase
trEMBLtr|A0A072UDP6|A0A072UDP6_MEDTR0Arabinose 5-phosphate isomerase, putative {ECO:0000313|EMBL:KEH23935.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001864500947043+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K06041kdsD, kpsF EC:5.3.1.13 Lipopolysaccharide biosynthesis map00540


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0016853  isomerase activity

GO:0030246  carbohydrate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000186s00009854.1PF01380.17SIS591873.20E-21
Glyur000186s00009854.1PF00571.23CBS2172732.80E-05
Glyur000186s00009854.1PF00571.23CBS2853409.50E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control41.804
SRR1783600control42.244
SRR1783602moderate drought stress24.103
SRR1811619moderate drought stress23.591

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain31.478
DRR006520Root Summer glycyrrhizin high producing strain30.374
DRR006521Root Winter glycyrrhizin high producing strain5.165
DRR006522Root Winter glycyrrhizin high producing strain5.239
DRR006523Root Summer glycyrrhizin low producing strain27.706
DRR006524Root Summer glycyrrhizin low producing strain28.804
DRR006525Leaf Summer glycyrrhizin high producing strain12.372
DRR006526Leaf Summer glycyrrhizin high producing strain12.473

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)26.639
SRR2868004Drought Stress(Tissue:root)13.599
SRR2967015Control (Tissue:root)15.582

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.725
SRR9715740Leave7.346
SRR9715741Leave10.005
SRR9715739Root48.122
SRR9715742Root32.322
SRR9715743Root32.944

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h12.842
SRR8749028MeJA induced 9h8.718
SRR8749029MeJA induced 9h9.600
SRR8749030Uninduced5.724
SRR8749031Uninduced2.716
SRR8749032Uninduced4.763

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root23.004
SRR8400027Control-Root33.432

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved