Gene detail information of Glyur000186s00009877.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G04020.22.00E-150breast cancer associated RING 1
NRXP_004493812.10PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Cicer arietinum]
Swissprottr|Q8RXD4|BRCA1_ARATH4.00E-92Protein BREAST CANCER SUSCEPTIBILITY 1 homolog
trEMBLtr|I1N9T1|I1N9T1_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G35010.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00186219248225479+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006281  DNA repair


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding

GO:0004842  ubiquitin-protein transferase activity

GO:0005515  protein binding

GO:0008270  zinc ion binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000186s00009877.2PF13923.1zf-C3HC4_233704.80E-08
Glyur000186s00009877.2PF13771.1zf-HC5HC2H3584241.80E-09
Glyur000186s00009877.2PF00533.21BRCT4645409.00E-10
Glyur000186s00009877.2PF00533.21BRCT5756781.50E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.969
SRR1783600control8.953
SRR1783602moderate drought stress11.008
SRR1811619moderate drought stress11.112

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain19.886
DRR006520Root Summer glycyrrhizin high producing strain19.561
DRR006521Root Winter glycyrrhizin high producing strain51.705
DRR006522Root Winter glycyrrhizin high producing strain50.812
DRR006523Root Summer glycyrrhizin low producing strain15.120
DRR006524Root Summer glycyrrhizin low producing strain15.187
DRR006525Leaf Summer glycyrrhizin high producing strain7.524
DRR006526Leaf Summer glycyrrhizin high producing strain7.640

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)20.978
SRR2868004Drought Stress(Tissue:root)16.739
SRR2967015Control (Tissue:root)18.416

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.986
SRR9715740Leave7.911
SRR9715741Leave12.478
SRR9715739Root4.293
SRR9715742Root12.576
SRR9715743Root11.354

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h25.559
SRR8749028MeJA induced 9h22.726
SRR8749029MeJA induced 9h17.596
SRR8749030Uninduced11.935
SRR8749031Uninduced13.868
SRR8749032Uninduced10.242

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root18.132
SRR8400027Control-Root13.267

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved