Gene detail information of Glyur000187s00024021.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G48950.1 | 2.00E-157 | Pectin lyase-like superfamily protein |
| NR | NP_001240215.1 | 0 | uncharacterized protein LOC100785005 precursor [Glycine max] |
| COG | YP_004455771.1 | 3.00E-40 | polygalacturonase [Melissococcus plutonius ATCC 35311] |
| Swissprot | tr|A7PZL3|PGLR_VITVI | 0 | Probable polygalacturonase |
| trEMBL | tr|C6T824|C6T824_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G29780.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00187 | 1805 | 4904 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000187s00024021.1 | PF00295.12 | Glyco_hydro_28 | 120 | 184 | 1.20E-06 |
| Glyur000187s00024021.1 | PF00295.12 | Glyco_hydro_28 | 222 | 435 | 4.20E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.025 |
| SRR1783600 | control | 0.025 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.111 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.148 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.133 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.033 |
| SRR2967015 | Control (Tissue:root) | 0.092 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.045 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.121 |
| SRR9715743 | Root | 0.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.001 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.717 |
| SRR8400027 | Control-Root | 1.041 |