Gene detail information of Glyur000188s00019474.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G37670.1 | 0 | Transducin/WD40 repeat-like superfamily protein |
| NR | XP_004516656.1 | 0 | PREDICTED: WD repeat-containing protein 44-like [Cicer arietinum] |
| COG | YP_001868100.1 | 1.00E-20 | hypothetical protein Npun_F4808 [Nostoc punctiforme PCC 73102] |
| Swissprot | tr|P49178|GBB_MAIZE | 3.00E-12 | Guanine nucleotide-binding protein subunit beta |
| trEMBL | tr|G7L3F0|G7L3F0_MEDTR | 0 | WD repeat-containing protein {ECO:0000313|EMBL:AES83711.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00188 | 26133 | 30314 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000188s00019474.1 | PF00400.27 | WD40 | 428 | 462 | 8.50E-10 |
| Glyur000188s00019474.1 | PF00400.27 | WD40 | 541 | 564 | 0.0039 |
| Glyur000188s00019474.1 | PF00400.27 | WD40 | 572 | 606 | 1.10E-06 |
| Glyur000188s00019474.1 | PF00400.27 | WD40 | 718 | 740 | 0.0003 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.607 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.544 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.582 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.461 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.037 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.037 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.785 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.785 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.960 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.080 |
| SRR2967015 | Control (Tissue:root) | 1.031 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.480 |
| SRR9715740 | Leave | 0.915 |
| SRR9715741 | Leave | 1.380 |
| SRR9715739 | Root | 0.403 |
| SRR9715742 | Root | 2.105 |
| SRR9715743 | Root | 1.342 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.854 |
| SRR8749028 | MeJA induced 9h | 6.517 |
| SRR8749029 | MeJA induced 9h | 6.767 |
| SRR8749030 | Uninduced | 9.939 |
| SRR8749031 | Uninduced | 15.800 |
| SRR8749032 | Uninduced | 9.911 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.840 |
| SRR8400027 | Control-Root | 0.690 |