Gene detail information of Glyur000188s00019482.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G28840.16.00E-95XB3 ortholog 1 in Arabidopsis thaliana
NRXP_003552156.10PREDICTED: putative E3 ubiquitin-protein ligase XBAT31-like [Glycine max]
COGYP_006705297.11.00E-10Ankyrin 2,3/unc44 [Cardinium endosymbiont cEper1 of Encarsia pergandiella]
Swissprottr|Q94B55|XB31_ARATH2.00E-141Putative E3 ubiquitin-protein ligase XBAT31
trEMBLtr|I1N2E2|I1N2E2_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G38610.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001885632960181-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000188s00019482.1PF12796.2Ank_2171137.60E-12
Glyur000188s00019482.1PF13857.1Ank_51251831.10E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.883
SRR1783600control3.898
SRR1783602moderate drought stress10.331
SRR1811619moderate drought stress10.361

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain10.666
DRR006520Root Summer glycyrrhizin high producing strain10.578
DRR006521Root Winter glycyrrhizin high producing strain8.275
DRR006522Root Winter glycyrrhizin high producing strain7.557
DRR006523Root Summer glycyrrhizin low producing strain17.411
DRR006524Root Summer glycyrrhizin low producing strain17.030
DRR006525Leaf Summer glycyrrhizin high producing strain1.857
DRR006526Leaf Summer glycyrrhizin high producing strain1.973

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)32.367
SRR2868004Drought Stress(Tissue:root)42.271
SRR2967015Control (Tissue:root)38.430

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.013
SRR9715740Leave10.007
SRR9715741Leave9.118
SRR9715739Root32.595
SRR9715742Root16.128
SRR9715743Root18.825

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h22.439
SRR8749028MeJA induced 9h11.525
SRR8749029MeJA induced 9h10.994
SRR8749030Uninduced5.476
SRR8749031Uninduced1.806
SRR8749032Uninduced6.134

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root20.674
SRR8400027Control-Root19.687

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved