Gene detail information of Glyur000188s00019484.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G46510.16.00E-157plant U-box 13
NRXP_004515619.10PREDICTED: U-box domain-containing protein 13-like [Cicer arietinum]
COGYP_001957542.13.00E-12hypothetical protein Aasi_0393 [Candidatus Amoebophilus asiaticus 5a2]
Swissprottr|Q9SNC6|PUB13_ARATH0U-box domain-containing protein 13
trEMBLtr|A0A072UAJ6|A0A072UAJ6_MEDTR0Armadillo/beta-catenin repeat protein {ECO:0000313|EMBL:KEH22840.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001887557483293+


Gene family

Gene familysubfamily
Ubiquitin FamilyU_box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0016567  protein ubiquitination


molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005488  binding

GO:0005515  protein binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000188s00019484.1PF04564.10U-box2633325.20E-19
Glyur000188s00019484.1PF00514.18Arm3884273.00E-10
Glyur000188s00019484.1PF00514.18Arm4715091.10E-05
Glyur000188s00019484.1PF00514.18Arm5535900.00021


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control4.495
SRR1783600control4.589
SRR1783602moderate drought stress5.613
SRR1811619moderate drought stress5.532

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.348
DRR006520Root Summer glycyrrhizin high producing strain3.272
DRR006521Root Winter glycyrrhizin high producing strain11.752
DRR006522Root Winter glycyrrhizin high producing strain11.207
DRR006523Root Summer glycyrrhizin low producing strain4.930
DRR006524Root Summer glycyrrhizin low producing strain4.950
DRR006525Leaf Summer glycyrrhizin high producing strain2.798
DRR006526Leaf Summer glycyrrhizin high producing strain2.865

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)7.731
SRR2868004Drought Stress(Tissue:root)6.840
SRR2967015Control (Tissue:root)8.710

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.114
SRR9715740Leave5.902
SRR9715741Leave3.487
SRR9715739Root0.989
SRR9715742Root2.594
SRR9715743Root1.974

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h8.244
SRR8749028MeJA induced 9h9.118
SRR8749029MeJA induced 9h6.733
SRR8749030Uninduced3.874
SRR8749031Uninduced2.549
SRR8749032Uninduced2.626

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root7.767
SRR8400027Control-Root6.863

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved