Gene detail information of Glyur000188s00019486.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G02460.1 | 5.00E-35 | Dof-type zinc finger DNA-binding family protein |
| NR | XP_004515618.1 | 5.57E-121 | PREDICTED: dof zinc finger protein DOF5.1-like [Cicer arietinum] |
| Swissprot | tr|O80928|DOF24_ARATH | 5.00E-49 | Dof zinc finger protein DOF2.4 |
| trEMBL | tr|A0A072TZB1|A0A072TZB1_MEDTR | 8.00E-105 | Dof domain zinc finger protein {ECO:0000313|EMBL:KEH22839.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00188 | 104710 | 106267 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-Dof |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000188s00019486.1 | PF02701.10 | zf-Dof | 73 | 133 | 4.20E-32 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.671 |
| SRR1783600 | control | 4.893 |
| SRR1783602 | moderate drought stress | 6.715 |
| SRR1811619 | moderate drought stress | 6.296 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.333 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.477 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.245 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.239 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.805 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.017 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.789 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.791 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 11.021 |
| SRR2868004 | Drought Stress(Tissue:root) | 10.522 |
| SRR2967015 | Control (Tissue:root) | 12.242 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.472 |
| SRR9715740 | Leave | 15.135 |
| SRR9715741 | Leave | 13.054 |
| SRR9715739 | Root | 3.801 |
| SRR9715742 | Root | 10.261 |
| SRR9715743 | Root | 8.534 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.052 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.788 |
| SRR8400027 | Control-Root | 9.558 |