Gene detail information of Glyur000188s00019488.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G37580.11.00E-19RING/U-box superfamily protein
NRXP_004515616.19.98E-56PREDICTED: RING-H2 finger protein ATL33-like isoform X1 [Cicer arietinum]
Swissprottr|O80927|ATL33_ARATH2.00E-23RING-H2 finger protein ATL33
trEMBLtr|A0A072U087|A0A072U087_MEDTR1.00E-45Anaphase-promoting complex subunit 11 RING-H2 finger protein {ECO:0000313|EMBL:KEH22836.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00188122041131478-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000188s00019488.1PF13639.1zf-RING_22683122.70E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control36.809
SRR1783600control34.073
SRR1783602moderate drought stress62.943
SRR1811619moderate drought stress57.598

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain23.596
DRR006520Root Summer glycyrrhizin high producing strain23.397
DRR006521Root Winter glycyrrhizin high producing strain4.292
DRR006522Root Winter glycyrrhizin high producing strain4.688
DRR006523Root Summer glycyrrhizin low producing strain12.263
DRR006524Root Summer glycyrrhizin low producing strain12.302
DRR006525Leaf Summer glycyrrhizin high producing strain7.790
DRR006526Leaf Summer glycyrrhizin high producing strain7.694

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.907
SRR2868004Drought Stress(Tissue:root)14.542
SRR2967015Control (Tissue:root)12.689

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.040
SRR9715740Leave11.304
SRR9715741Leave10.807
SRR9715739Root24.612
SRR9715742Root19.952
SRR9715743Root20.593

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h14.366
SRR8749028MeJA induced 9h15.988
SRR8749029MeJA induced 9h12.504
SRR8749030Uninduced9.203
SRR8749031Uninduced13.354
SRR8749032Uninduced9.253

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root27.753
SRR8400027Control-Root29.006

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved