Gene detail

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Gene detail information of Glyur000189s00009589.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G06400.2	0	chromatin-remodeling protein 11
NR	XP_007147874.1	0	hypothetical protein PHAVU_006G162200g [Phaseolus vulgaris]
COG	YP_004194378.1	6.00E-86	SNF2-like protein [Desulfobulbus propionicus DSM 2032]
Swissprot	tr\|Q8RWY3\|ISW2_ARATH	0	Putative chromatin-remodeling complex ATPase chain
trEMBL	tr\|V7BS68\|V7BS68_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW19868.1}

Sequence

Transcript Sequence

>Glyur000189s00009589.1
TGACTTCAAAAACACAAAGGGACAAGCAAAGCCCTCTCTCTCGAATTTCGATTTCTCTCGCTCACAACAAACCCTTGTTTCGAGTCGAGAGAGAGAATCCATGGCGAGACCTTCGAAGCCGCAGGTCTCTTCCGACGAAGCACTCTCCAACGCTTCCACTTCATCGGAGGAAGAAGAGCAAGTCAATGAACAAATCAACGAAGAAGAAGACGACGAGGAGTTGGAGGCCGTGGCACGCTCCGCCAGTTCCGACGANGACGAAGAAGAAGTCGCCGTGGACAATCCGCCTGATTCCGACGAAGATCCTGCTGCTGCTGAAGATGGCGAGGACGACGAACAGGAAGGAGATAANGTTGATCCTGAAATTAGCAAGCGCGAGAAGGCCAGATTAAGAGANATGCAAAAAATGAAGAAACAGAAATTTCAGGAGATATTGGATGCGCAGAATGCCGCCATTGACGCTGACATGAACAATAGAGGGAAGGGGCGTTTGAAGTATCTCTTACAGCAGACTGAGCTGTTTGCTCATTTTGCNAAAGGTGATCAATCTACATCTCAAAAGAAGACAAAGGGAAGGGGTCGCCATGCATCAAAAGTGACTGAAGAAGAGGAAGATGAAGAATACCTGAAAGAAGAAGAAGATGGTTTATCTAACACNCGTCTGGTGACACAACCATCATGTATCCAGGGGAAGTTGAGGGATTACCAATTGGCTGGACTAAACTGGCTCATACGATTGTATGAGAATGGAATAAATGGAATTCTGGCCGATGAGATGGGGCTTGGTAAAACATTGCAAACTATATCTTTATTGGGCTATTTGCATGAGTTCAGAGGAATCAAAGGCCCTCATATGGTGGTTGCTCCGAAATCAACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTATTCTGCGTGCAGTAAAATTCCTTGGCAATCCTGAAGAAAGGAGACATATAAGAGAGGATTTGTTGGTTGCTGGGAAGTTTGATGTTTGTGTTACAAGTTTCGAAATGGCCATCAAGGAGAAGTCTGCTTTGCGTCGATTTAGTTGGCGCTACATAATTATTGATGAAGCTCACCGAATCAAGAACGAGAATTCCTTGCTGTCGAAAACAATGAGGCTCTACAATACAAACTATCGCCTCCTTATTACTGGCACACCACTTCAGAATAATCTTCATGAACTTTGGTCTCTTCTCAACTTTCTTCTGCCCGAAATTTTNAGTTCTGCTGAAACCTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAATTACACAAGGTCCTCCGACCATTTCTCCTTCGAAGGTTGAAGTCAGATGTCGAGAAAGGGTTGCCACCAAAAAAAGAAACCATTCTTAAAGTAGGAATGTCGCAAATGCAGAAACAGTATTATAGAGCACTACTGCAGAAGGATCTTGAGGTTGTCAATGCTGGTGGAGAACGGAAGCGCCTCTTGAATATAGCTATGCAACTACGCAAATGTTGTAATCATCCATATCTTTTCCAAGGTGCTGAACCCGGTCCTCCCTATACAACAGGAGACCATCTTATTACAAACGCTGGTAAAATGGTTCTTTTGGATAAGTTACTTCCGAAATTNAAGGAGCGTGATTCGAGGGTCCTTATATTTTCACAGATGACTCGGCTTTTAGACATACTNGAAGATTATTTAATGTTCCGTGGATATCAATATTGTCGCATAGATGGCAATACTGGTGGGGATGATCGTGATGCCTCCATCGATGCTTTCAACAAACCTGGAAGTGAGAAATTTGTATTCTTGTTATCAACTCGGGCTGGAGGTCTTGGTATTAATCTTGCAACTGCTGATGTCGTCATTCTGTATGATAGTGACTGGAACCCACAAGTTGACTTGCAGGCTCAGGATCGTGCACATAGGATAGGTCAAAAGAAAGAAGTTCAAGTTTTCCGTTTTTGCACTGAGTATACAATTGAGGAGAAAGTCATTGAAAGGGCTTACAAAAAGCTTGCACTTGATGCTCTTGTTATTCAGCAAGGGCGATTGGCTGAGCAGAAGACGGTAAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGGGCTGAAATGGTTTTCAGTTCCAAGGATAGTACAATTACAGATGAGGATATTGATAGAATTATTGCTAAAGGNGAAGAGGCAACTGCTGAGCTTGATGCCAAGATGAAGAAATTTACTGAAGATGCAATCAAATTTAAGATGGATGACACTGCTGAGTTATATGATTTTGATGATGAGAAGGATGAGAACAAATTGGATTTCAAAAAAATTGTGAGTGAAAACTGGATTGAACCACCAAAAAGGGAGCGGAAGCGCAATTACTCAGAGTCTGAATACTTCAAGCAAACAATGCGCCAAGGTGGTCCTACTAAACCAAAAGAGCCCCGTATTCCNAGGATGCCTCAGTTGCATGATTTCCAGTTTTTCAACACACAAAGACTGAGTGAGTTGTATGAAAAGGAAGTNCGCTATCTCATGCAAACACATCAGAAGAATCAGATAAAGGACTCGATAGATGTTGACGAAACAGAAGAGGTGGGAGATCCATTGACTGCTGAAGAGTTGGACGAAAAGGAACGCCTGCTAGAAGAGGGATTTTCATCATGGAGCCGGAGAGATTTTAATACCTTCATCAGAGCCTGTGAAAAATATGGCCGAAATGATATAACAAGTATTGCTTCTGAGATGGAAGGAAAAACTGAAGAGGAAGTTGAAAGATATGCAAAGGTCTTCAAAGAAAGATACAAAGAATTAAATGATTATGATAGAATTATCAAAAACATTGAGAGGGGAGAGGCTAGAATTTCTCGGAAGGATGAGATCATGAAAGCCATCGGGAAGAAGTTGGATCGCTACAAGAACCCTTGGCTAGAGTTGAAGATACAGTATGGGCAAAACAAAGGNAAGTTATACAACGAAGAATGTGACAGATTCATGATATGCATGGTTCACAAACTTGGCTATGGGAACTGGGATGAGTTGAAGGCAGCATTTAGAACATCACCCTTGTTTAGATTTGATTGGTTTGTCAAGTCTCGCACAACACAGGAACTTGCAAGGAGGTGTGATACCCTCATTCGGCTAGTAGAAAAGGAAAACCAAGAATGTGATGAGAGGGAGAGACAAGCTCGCAAAGAGAAGAAACTTGCCAAGAGCATGACCCCTTCAAAGCGTGCTTTGGCAAGACAGACCGAGAGTCCATCTTCTTTGAAGAAGCGCAAGCAGTTAACTATGGATGATTATACAAGCACGATCAATGCTATTGTGGCAGGGGAAGAGGAGAAAATAAATTGA

Protein Sequence

>Glyur000189s00009589.1
MARPSKPQVSSDEALSNASTSSEEEEQVNEQINEEEDDEELEAVARSASSDXDEEEVAVDNPPDSDEDPAAAEDGEDDEQEGDXVDPEISKREKARLRXMQKMKKQKFQEILDAQNAAIDADMNNRGKGRLKYLLQQTELFAHFAKGDQSTSQKKTKGRGRHASKVTEEEEDEEYLKEEEDGLSNTRLVTQPSCIQGKLRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPILRAVKFLGNPEERRHIREDLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIXSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKXKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDENKLDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQIKDSIDVDETEEVGDPLTAEELDEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDITSIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQECDERERQARKEKKLAKSMTPSKRALARQTESPSSLKKRKQLTMDDYTSTINAIVAGEEEKIN

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00189	31074	38596	-

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006338 chromatin remodeling

GO:0043044 ATP-dependent chromatin remodeling

cellular_component GO:0005634 nucleus GO:0016589 NURF complex molecular_function GO:0003676 nucleic acid binding GO:0003677 DNA binding GO:0003682 chromatin binding GO:0005524 ATP binding GO:0016817 hydrolase activity, acting on acid anhydrides GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides GO:0016887 ATPase activity GO:0031491 nucleosome binding "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000189s00009589.1	PF13892.1	DBINO	96	151	0.00012
Glyur000189s00009589.1	PF00176.18	SNF2_N	202	480	7.70E-79
Glyur000189s00009589.1	PF00271.26	Helicase_C	535	614	6.00E-15
Glyur000189s00009589.1	PF09110.6	HAND	763	826	7.50E-06
Glyur000189s00009589.1	PF09111.5	SLIDE	906	1019	8.10E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	69.083
SRR1783600	control	69.273
SRR1783602	moderate drought stress	120.901
SRR1811619	moderate drought stress	116.928

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	79.827
DRR006520	Root Summer glycyrrhizin high producing strain	80.114
DRR006521	Root Winter glycyrrhizin high producing strain	68.224
DRR006522	Root Winter glycyrrhizin high producing strain	66.914
DRR006523	Root Summer glycyrrhizin low producing strain	93.024
DRR006524	Root Summer glycyrrhizin low producing strain	93.155
DRR006525	Leaf Summer glycyrrhizin high producing strain	36.236
DRR006526	Leaf Summer glycyrrhizin high producing strain	36.440

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	64.161
SRR2868004	Drought Stress(Tissue:root)	70.612
SRR2967015	Control (Tissue:root)	75.832

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	50.630
SRR9715740	Leave	54.569
SRR9715741	Leave	60.453
SRR9715739	Root	5.418
SRR9715742	Root	44.037
SRR9715743	Root	39.943

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	92.087
SRR8749028	MeJA induced 9h	136.308
SRR8749029	MeJA induced 9h	78.617
SRR8749030	Uninduced	68.230
SRR8749031	Uninduced	68.907
SRR8749032	Uninduced	44.388

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	82.864
SRR8400027	Control-Root	79.445