Gene detail information of Glyur000189s00009593.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G18650.11.00E-112CHY-type/CTCHY-type/RING-type Zinc finger protein
NRXP_010098324.17.41E-161RING finger and CHY zinc finger domain-containing protein 1 [Morus notabilis]
trEMBLtr|W9R6T7|W9R6T7_9ROSA3.00E-161RING finger and CHY zinc finger domain-containing protein 1 {ECO:0000313|EMBL:EXB74828.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001895210355588+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10144RCHY1, PIRH2 EC:2.3.2.27 Ubiquitin mediated proteolysis map04120
p53 signaling pathwaymap04115
Measlesmap05162


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000189s00009593.1PF05495.7zf-CHY991458.40E-07
Glyur000189s00009593.1PF13639.1zf-RING_21972401.20E-07
Glyur000189s00009593.1PF14599.1zinc_ribbon_62443032.70E-28


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.711
SRR1783600control8.748
SRR1783602moderate drought stress11.436
SRR1811619moderate drought stress11.391

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.795
DRR006520Root Summer glycyrrhizin high producing strain5.963
DRR006521Root Winter glycyrrhizin high producing strain5.446
DRR006522Root Winter glycyrrhizin high producing strain5.636
DRR006523Root Summer glycyrrhizin low producing strain5.389
DRR006524Root Summer glycyrrhizin low producing strain5.403
DRR006525Leaf Summer glycyrrhizin high producing strain20.510
DRR006526Leaf Summer glycyrrhizin high producing strain20.496

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)48.049
SRR2868004Drought Stress(Tissue:root)60.433
SRR2967015Control (Tissue:root)70.904

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave48.936
SRR9715740Leave52.955
SRR9715741Leave77.339
SRR9715739Root13.946
SRR9715742Root15.776
SRR9715743Root15.835

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h19.718
SRR8749028MeJA induced 9h23.286
SRR8749029MeJA induced 9h19.291
SRR8749030Uninduced17.074
SRR8749031Uninduced18.193
SRR8749032Uninduced24.543

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root29.192
SRR8400027Control-Root25.492

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved