Gene detail

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Gene detail information of Glyur000189s00009597.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G18660.1	2.00E-167	NAD(P)-binding Rossmann-fold superfamily protein
NR	XP_003542917.1	0	PREDICTED: divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic-like [Glycine max]
COG	YP_002018055.1	7.00E-149	NmrA family protein [Pelodictyon phaeoclathratiforme BU-1]
Swissprot	tr\|J9RYI6\|DCVR_CUCSA	0	Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic (Precursor)
trEMBL	tr\|I1M1C4\|I1M1C4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G28670.1}

Sequence

Transcript Sequence

>Glyur000189s00009597.1
ATGTCCCTTTGTTATTCTTCCAATCTGATTACTCTCCCCTCACCCAAGCACCAAACTCTATCCTCAAATCTCTCTTCAGAGTCTTCTCACTTCATCAAGCTATTTCGGGTAAGCTCAACTCCTTATCCTCAGAAATCATATCGACCCATCATGTTTAGAAGACGAAGTTTGAAACTTTCAGCATCTCTCACACCATCTCAAGCCGTTGAGGCNACCCCATCTACANATAGAAGCAAGAACCCAAAAGATGTTAACGTCCTTGTGGTGGGTTCAACAGGGTACATTGGAAAATTTGTGGTGAGAGAGTTGGTTAAGAGAGGCTTCAACGTCACAGCCATTGCTAGAGAGAGGAGTGGAATTAAGGGAAGCAATGACAAGGATGCAACATTGGCTCAGCTAAGAGGGTCCAATGTGTGTTTCTCTGATGTAACCAATTTGGAGAATCTTGAGGAATCTCTGAACAACCTAGGGGTTTCATTTGATGTTGTGGTGTCATGTCTTGCTAGTAGAAATGGAGGGGTGAAGGACTCATGGAAGATTGATTATGAGGCAACAAGGAATAGCCTTGTAGCTGGTAGGAAGCTTGGTGCTTCTCATTTTGTGTTGCTCTCAGCAATTTGTGTTCAGAAGCCACTTCTTGAGTTCCAGCGTGCAAAGCTGAAGTTTGAGGCTGAATTGATCAAGGAAGCTGAAGAGGGTGATGGATTCACTTACAGCATAGTGAGGCCAACCGCATTCTTCAAGAGTTTGGGTGGTCAGGTTGAGTTTGTGAAGGACGGGAAGCCTTATGTGATGTTTGGGGATGGAAACTTGTGTGCTTGTAAACCCATGAGTGAGCAAGATTTGGCTTCTTTCATTGTGGATTGTGTGCTGAGTGAGGACAAAATCAACAGGATCTTGCCTATTGGAGGGCCAGGGAAGGCATTGACTCCATTGGAACAAGGGGAGATGNTGTTTAAGCTTTTGGGGAAGGAGCCTAAGTTCTTGAAGGTTCCTATTGGGATCATGGATTTTGCCATTGGGGTTCTTGACTTTTTGGTTAAGATCTTCCCTTCATTGGAAGATGCTGCTGAGTTTGGGAAAATTGGAAGGTACTATGCAGCTGAGAGTATGTTGCTTTTGGATCCCGAGACCGGCGAGTATAGTGCTGAGAAGACACCTAGCTATGGGAATGATACATTGGAAGAGTTCTTTGCAAGGGTGCTCAGGGAGGGGATGGCTGGTCAGGAGCTAGGTGAGCAAACAATATTCTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00189	67214	68467	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K19073	DVR	EC:1.3.1.75	Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000189s00009597.1	PF13460.1	NAD_binding_10	86	291	8.60E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.821
SRR1783600	control	6.620
SRR1783602	moderate drought stress	6.208
SRR1811619	moderate drought stress	6.416

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.748
DRR006520	Root Summer glycyrrhizin high producing strain	7.539
DRR006521	Root Winter glycyrrhizin high producing strain	2.723
DRR006522	Root Winter glycyrrhizin high producing strain	2.880
DRR006523	Root Summer glycyrrhizin low producing strain	6.130
DRR006524	Root Summer glycyrrhizin low producing strain	6.203
DRR006525	Leaf Summer glycyrrhizin high producing strain	57.205
DRR006526	Leaf Summer glycyrrhizin high producing strain	57.981

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	5.916
SRR2868004	Drought Stress(Tissue:root)	4.848
SRR2967015	Control (Tissue:root)	4.408

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	28.803
SRR9715740	Leave	44.534
SRR9715741	Leave	16.530
SRR9715739	Root	3.328
SRR9715742	Root	2.287
SRR9715743	Root	2.918

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.186
SRR8749028	MeJA induced 9h	4.308
SRR8749029	MeJA induced 9h	2.161
SRR8749030	Uninduced	1.423
SRR8749031	Uninduced	0.244
SRR8749032	Uninduced	0.491

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	6.579
SRR8400027	Control-Root	8.301