Gene detail information of Glyur000189s00009601.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G18670.1 | 1.00E-146 | beta-amylase 3 |
| NR | XP_003594004.1 | 0 | Beta-amylase [Medicago truncatula] |
| COG | YP_001253727.1 | 6.00E-23 | beta-amylase [Clostridium botulinum A str. ATCC 3502] |
| Swissprot | tr|Q8VYW2|BAM9_ARATH | 0 | Inactive beta-amylase 9 |
| trEMBL | tr|G7ISJ8|G7ISJ8_MEDTR | 0 | Beta-amylase {ECO:0000313|EMBL:AES64255.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00189 | 88463 | 91492 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH14 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000189s00009601.1 | PF01373.12 | Glyco_hydro_14 | 85 | 224 | 2.00E-24 |
| Glyur000189s00009601.1 | PF01373.12 | Glyco_hydro_14 | 225 | 459 | 2.10E-34 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.159 |
| SRR1783600 | control | 19.046 |
| SRR1783602 | moderate drought stress | 35.256 |
| SRR1811619 | moderate drought stress | 34.960 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 180.757 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 179.177 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 128.330 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 124.382 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 222.869 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 220.882 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 46.655 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 45.803 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 37.727 |
| SRR2868004 | Drought Stress(Tissue:root) | 96.759 |
| SRR2967015 | Control (Tissue:root) | 146.504 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 605.532 |
| SRR9715740 | Leave | 323.950 |
| SRR9715741 | Leave | 647.461 |
| SRR9715739 | Root | 425.467 |
| SRR9715742 | Root | 522.111 |
| SRR9715743 | Root | 483.354 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 207.918 |
| SRR8749028 | MeJA induced 9h | 607.921 |
| SRR8749029 | MeJA induced 9h | 345.005 |
| SRR8749030 | Uninduced | 210.771 |
| SRR8749031 | Uninduced | 480.610 |
| SRR8749032 | Uninduced | 444.731 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 91.892 |
| SRR8400027 | Control-Root | 78.843 |