Gene detail information of Glyur000189s00009602.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G47900.3 | 2.00E-153 | tubby like protein 3 |
| NR | XP_003594006.1 | 0 | Tubby-like F-box protein [Medicago truncatula] |
| Swissprot | tr|Q10LG8|TLP6_ORYSJ | 0 | Tubby-like F-box protein 6 |
| trEMBL | tr|G7ISK0|G7ISK0_MEDTR | 0 | Tubby-like F-box protein {ECO:0000256|RuleBase:RU361125} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00189 | 94474 | 99100 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | TUB |
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000189s00009602.1 | PF00646.28 | F-box | 38 | 89 | 7.60E-09 |
| Glyur000189s00009602.1 | PF01167.13 | Tub | 103 | 385 | 1.20E-108 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.107 |
| SRR1783600 | control | 18.177 |
| SRR1783602 | moderate drought stress | 24.639 |
| SRR1811619 | moderate drought stress | 24.440 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 37.554 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 36.847 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 68.080 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 65.560 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 39.137 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 38.949 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 58.550 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 58.936 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 39.097 |
| SRR2868004 | Drought Stress(Tissue:root) | 30.911 |
| SRR2967015 | Control (Tissue:root) | 50.271 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 34.540 |
| SRR9715740 | Leave | 42.674 |
| SRR9715741 | Leave | 31.314 |
| SRR9715739 | Root | 10.649 |
| SRR9715742 | Root | 22.549 |
| SRR9715743 | Root | 20.166 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 37.832 |
| SRR8749028 | MeJA induced 9h | 116.314 |
| SRR8749029 | MeJA induced 9h | 92.089 |
| SRR8749030 | Uninduced | 25.500 |
| SRR8749031 | Uninduced | 23.241 |
| SRR8749032 | Uninduced | 40.996 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 45.029 |
| SRR8400027 | Control-Root | 49.096 |