Gene detail information of Glyur000189s00009616.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G15560.10Deoxyxylulose-5-phosphate synthase
NRKDO74968.10hypothetical protein CISIN_1g004923mg [Citrus sinensis]
COGYP_002289642.101-deoxy-D-xylulose-5-phosphate synthase [Oligotropha carboxidovorans OM5]
Swissprottr|O78328|DXS_CAPAN0Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic (Precursor)
trEMBLtr|A0A067G5T2|A0A067G5T2_CITSI0Uncharacterized protein {ECO:0000313|EMBL:KDO74968.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00189171732176121-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01662dxs EC:2.2.1.7 Thiamine metabolism map00730
Terpenoid backbone biosynthesismap00900


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0016114  terpenoid biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0008661  1-deoxy-D-xylulose-5-phosphate synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000189s00009616.1PF13292.1DXP_synthase_N462472.50E-87
Glyur000189s00009616.1PF13292.1DXP_synthase_N2803522.70E-12
Glyur000189s00009616.1PF02779.19Transket_pyr3905509.50E-45
Glyur000189s00009616.1PF02780.15Transketolase_C5536681.40E-28


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.787
SRR1783600control0.871
SRR1783602moderate drought stress0.802
SRR1811619moderate drought stress0.881

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.996
DRR006520Root Summer glycyrrhizin high producing strain1.750
DRR006521Root Winter glycyrrhizin high producing strain1.525
DRR006522Root Winter glycyrrhizin high producing strain1.455
DRR006523Root Summer glycyrrhizin low producing strain1.422
DRR006524Root Summer glycyrrhizin low producing strain1.191
DRR006525Leaf Summer glycyrrhizin high producing strain35.099
DRR006526Leaf Summer glycyrrhizin high producing strain34.598

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)5.581
SRR2868004Drought Stress(Tissue:root)5.188
SRR2967015Control (Tissue:root)4.739

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave46.157
SRR9715740Leave29.714
SRR9715741Leave32.781
SRR9715739Root0.041
SRR9715742Root0.614
SRR9715743Root0.756

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h6.943
SRR8749028MeJA induced 9h8.111
SRR8749029MeJA induced 9h2.749
SRR8749030Uninduced6.301
SRR8749031Uninduced0.890
SRR8749032Uninduced2.436

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root2.848
SRR8400027Control-Root2.416

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved