Gene detail information of Glyur000189s00009617.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G18830.22.00E-176squamosa promoter binding protein-like 7
NRAES64286.20squamosa promoter-binding-like protein [Medicago truncatula]
Swissprottr|Q8S9G8|SPL7_ARATH0Squamosa promoter-binding-like protein 7
trEMBLtr|G7IFL1|G7IFL1_MEDTR0Squamosa promoter-binding-like protein {ECO:0000313|EMBL:AES64286.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00189181560187432+


Gene family

Gene familysubfamily
Transcription Factors FamilySBP


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

cellular_component

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000189s00009617.1PF03110.9SBP1302061.10E-33


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.743
SRR1783600control16.711
SRR1783602moderate drought stress17.913
SRR1811619moderate drought stress18.020

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain17.841
DRR006520Root Summer glycyrrhizin high producing strain17.445
DRR006521Root Winter glycyrrhizin high producing strain10.933
DRR006522Root Winter glycyrrhizin high producing strain10.620
DRR006523Root Summer glycyrrhizin low producing strain15.677
DRR006524Root Summer glycyrrhizin low producing strain15.667
DRR006525Leaf Summer glycyrrhizin high producing strain10.285
DRR006526Leaf Summer glycyrrhizin high producing strain10.243

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)28.161
SRR2868004Drought Stress(Tissue:root)33.319
SRR2967015Control (Tissue:root)28.751

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave29.140
SRR9715740Leave23.889
SRR9715741Leave36.516
SRR9715739Root7.548
SRR9715742Root36.537
SRR9715743Root30.757

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h7.304
SRR8749028MeJA induced 9h10.997
SRR8749029MeJA induced 9h3.787
SRR8749030Uninduced11.733
SRR8749031Uninduced7.912
SRR8749032Uninduced4.619

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root24.843
SRR8400027Control-Root26.204

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved