Gene detail information of Glyur000189s00009619.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G03020.2 | 3.00E-161 | transducin family protein / WD-40 repeat family protein |
| NR | XP_004486079.1 | 0 | PREDICTED: LEC14B homolog isoform X1 [Cicer arietinum] |
| COG | YP_007146920.1 | 3.00E-13 | WD40 repeat-containing protein [Cylindrospermum stagnale PCC 7417] |
| Swissprot | tr|O24467|LE14B_PRUAR | 0 | LEC14B homolog |
| trEMBL | tr|V7BPE5|V7BPE5_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW19839.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00189 | 195607 | 200317 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000189s00009619.1 | PF00400.27 | WD40 | 217 | 250 | 1.80E-06 |
| Glyur000189s00009619.1 | PF00400.27 | WD40 | 259 | 296 | 0.0054 |
| Glyur000189s00009619.1 | PF00400.27 | WD40 | 368 | 403 | 4.50E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.566 |
| SRR1783600 | control | 7.837 |
| SRR1783602 | moderate drought stress | 5.392 |
| SRR1811619 | moderate drought stress | 5.441 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.202 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.563 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.096 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.894 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.321 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.677 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.519 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.511 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 18.211 |
| SRR2868004 | Drought Stress(Tissue:root) | 24.560 |
| SRR2967015 | Control (Tissue:root) | 26.242 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 12.808 |
| SRR9715740 | Leave | 15.684 |
| SRR9715741 | Leave | 16.579 |
| SRR9715739 | Root | 3.732 |
| SRR9715742 | Root | 6.293 |
| SRR9715743 | Root | 6.551 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.329 |
| SRR8749028 | MeJA induced 9h | 20.468 |
| SRR8749029 | MeJA induced 9h | 13.211 |
| SRR8749030 | Uninduced | 16.804 |
| SRR8749031 | Uninduced | 22.781 |
| SRR8749032 | Uninduced | 19.511 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 17.900 |
| SRR8400027 | Control-Root | 17.422 |