Gene detail information of Glyur000190s00015714.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G08860.12.00E-119PYRIMIDINE 4
NRXP_003623559.16.61E-179Alanine glyoxylate aminotransferase-like protein [Medicago truncatula]
COGYP_001817512.15.00E-95class III aminotransferase [Opitutus terrae PB90-1]
Swissprottr|Q9SR86|AGT23_ARATH2.00E-159Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial (Precursor)
trEMBLtr|G7KX17|G7KX17_MEDTR2.00E-179Alanine-glyoxylate aminotransferase-like protein {ECO:0000313|EMBL:AES79777.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0019036667686+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00827AGXT2 EC:2.6.1.44 2.6.1.40 Alanine, aspartate and glutamate metabolism map00250
Glycine, serine and threonine metabolismmap00260
Cysteine and methionine metabolismmap00270
Valine, leucine and isoleucine degradationmap00280


Gene Ontology

molecular_function

GO:0003824  catalytic activity

GO:0008483  transaminase activity

GO:0030170  pyridoxal phosphate binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000190s00015714.1PF00202.16Aminotran_3122063.00E-51


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control11.500
SRR1783600control11.704
SRR1783602moderate drought stress26.308
SRR1811619moderate drought stress26.389

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain15.666
DRR006520Root Summer glycyrrhizin high producing strain15.140
DRR006521Root Winter glycyrrhizin high producing strain123.969
DRR006522Root Winter glycyrrhizin high producing strain122.003
DRR006523Root Summer glycyrrhizin low producing strain17.001
DRR006524Root Summer glycyrrhizin low producing strain17.561
DRR006525Leaf Summer glycyrrhizin high producing strain1.690
DRR006526Leaf Summer glycyrrhizin high producing strain1.743

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)20.644
SRR2868004Drought Stress(Tissue:root)44.674
SRR2967015Control (Tissue:root)38.896

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.132
SRR9715740Leave9.850
SRR9715741Leave15.149
SRR9715739Root7.953
SRR9715742Root25.269
SRR9715743Root22.300

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h48.778
SRR8749028MeJA induced 9h95.428
SRR8749029MeJA induced 9h53.022
SRR8749030Uninduced65.160
SRR8749031Uninduced45.914
SRR8749032Uninduced105.278

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root16.184
SRR8400027Control-Root14.618

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved