Gene detail information of Glyur000190s00015736.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G17890.33.00E-153NAD(P)-binding Rossmann-fold superfamily protein
NRKHN29551.10Putative GDP-L-fucose synthase 2 [Glycine soja]
COGYP_003526872.18.00E-150NAD-dependent epimerase/dehydratase [Nitrosococcus halophilus Nc 4]
Swissprottr|Q9LMU0|FCL2_ARATH0Putative GDP-L-fucose synthase 2
trEMBLtr|I1L759|I1L759_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G41650.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00190196602198262-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02377TSTA3, fcl EC:1.1.1.271 Fructose and mannose metabolism map00051
Amino sugar and nucleotide sugar metabolismmap00520


Gene Ontology

biological_process

GO:0042351  'de novo' GDP-L-fucose biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0050577  GDP-L-fucose synthase activity

GO:0050662  coenzyme binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000190s00015736.1PF01370.16Epimerase753067.60E-74


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control23.643
SRR1783600control23.244
SRR1783602moderate drought stress16.389
SRR1811619moderate drought stress16.413

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain20.843
DRR006520Root Summer glycyrrhizin high producing strain20.969
DRR006521Root Winter glycyrrhizin high producing strain8.431
DRR006522Root Winter glycyrrhizin high producing strain7.605
DRR006523Root Summer glycyrrhizin low producing strain19.135
DRR006524Root Summer glycyrrhizin low producing strain19.579
DRR006525Leaf Summer glycyrrhizin high producing strain21.166
DRR006526Leaf Summer glycyrrhizin high producing strain20.671

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)51.409
SRR2868004Drought Stress(Tissue:root)36.011
SRR2967015Control (Tissue:root)31.789

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave18.522
SRR9715740Leave20.980
SRR9715741Leave16.492
SRR9715739Root16.294
SRR9715742Root13.879
SRR9715743Root13.513

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h16.660
SRR8749028MeJA induced 9h15.192
SRR8749029MeJA induced 9h12.205
SRR8749030Uninduced9.741
SRR8749031Uninduced5.190
SRR8749032Uninduced5.326

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root26.711
SRR8400027Control-Root25.369

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved