Gene detail information of Glyur000191s00015625.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G26140.10FTSH protease 4
NRCAG25608.10ftsH-like protease [Pisum sativum]
COGYP_001413397.10ATP-dependent metalloprotease FtsH [Parvibaculum lavamentivorans DS-1]
Swissprottr|O80983|FTSH4_ARATH0ATP-dependent zinc metalloprotease FTSH 4, mitochondrial (Precursor)
trEMBLtr|Q6KC90|Q6KC90_PEA0FtsH-like protease {ECO:0000313|EMBL:CAG25608.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00191111347117225-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K08955YME1 EC:3.4.24.- Mitophagy - yeast map04139


Gene Ontology

biological_process

GO:0006508  proteolysis


cellular_component

GO:0016020  membrane


molecular_function

GO:0004222  metalloendopeptidase activity

GO:0005524  ATP binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000191s00015625.1PF00004.24AAA2613902.60E-43
Glyur000191s00015625.1PF01434.13Peptidase_M414516523.60E-77


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control29.318
SRR1783600control29.349
SRR1783602moderate drought stress25.855
SRR1811619moderate drought stress25.854

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain41.889
DRR006520Root Summer glycyrrhizin high producing strain41.454
DRR006521Root Winter glycyrrhizin high producing strain72.826
DRR006522Root Winter glycyrrhizin high producing strain71.152
DRR006523Root Summer glycyrrhizin low producing strain41.600
DRR006524Root Summer glycyrrhizin low producing strain41.440
DRR006525Leaf Summer glycyrrhizin high producing strain49.885
DRR006526Leaf Summer glycyrrhizin high producing strain49.746

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)76.596
SRR2868004Drought Stress(Tissue:root)82.761
SRR2967015Control (Tissue:root)77.211

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave81.078
SRR9715740Leave92.307
SRR9715741Leave92.226
SRR9715739Root22.321
SRR9715742Root55.045
SRR9715743Root47.643

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h66.336
SRR8749028MeJA induced 9h75.863
SRR8749029MeJA induced 9h45.435
SRR8749030Uninduced58.643
SRR8749031Uninduced53.973
SRR8749032Uninduced49.642

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root62.786
SRR8400027Control-Root62.483

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved