Gene detail information of Glyur000191s00015629.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G26150.16.00E-99heat shock transcription factor A2
NRXP_003603161.10Heat stress transcription factor A-2 [Medicago truncatula]
Swissprottr|O80982|HSFA2_ARATH8.00E-121Heat stress transcription factor A-2
trEMBLtr|G7J7P1|G7J7P1_MEDTR0Heat shock transcription factor A3 {ECO:0000313|EMBL:AES73412.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00191136154139773+


Gene family

Gene familysubfamily
Transcription Factors FamilyHSF


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated

GO:0009408  response to heat


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0043565  sequence-specific DNA binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000191s00015629.1PF00447.12HSF_DNA-bind2093003.30E-32


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.660
SRR1783600control6.569
SRR1783602moderate drought stress10.351
SRR1811619moderate drought stress10.370

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain63.938
DRR006520Root Summer glycyrrhizin high producing strain63.815
DRR006521Root Winter glycyrrhizin high producing strain56.764
DRR006522Root Winter glycyrrhizin high producing strain54.805
DRR006523Root Summer glycyrrhizin low producing strain19.306
DRR006524Root Summer glycyrrhizin low producing strain19.395
DRR006525Leaf Summer glycyrrhizin high producing strain42.844
DRR006526Leaf Summer glycyrrhizin high producing strain42.935

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.303
SRR2868004Drought Stress(Tissue:root)13.605
SRR2967015Control (Tissue:root)19.139

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave13.915
SRR9715740Leave29.945
SRR9715741Leave34.484
SRR9715739Root9.021
SRR9715742Root17.302
SRR9715743Root15.821

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h17.591
SRR8749028MeJA induced 9h18.277
SRR8749029MeJA induced 9h9.973
SRR8749030Uninduced2.725
SRR8749031Uninduced0.846
SRR8749032Uninduced2.788

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root24.035
SRR8400027Control-Root25.997

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved