Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur000192s00009335.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G40360.1	0	Transducin/WD40 repeat-like superfamily protein
NR	XP_003548639.1	0	PREDICTED: ribosome biogenesis protein BOP1 homolog [Glycine max]
COG	YP_001870013.1	1.00E-10	WD-40 repeat-containing protein [Nostoc punctiforme PCC 73102]
Swissprot	tr\|A8ID74\|BOP1_CHLRE	0	Ribosome biogenesis protein BOP1 homolog {ECO:0000255\|HAMAP-Rule:MF_03027}
trEMBL	tr\|K7MED3\|K7MED3_SOYBN	0	Ribosome biogenesis protein BOP1 homolog {ECO:0000256\|HAMAP-Rule:MF_03027}

Sequence

Transcript Sequence

>Glyur000192s00009335.1
CTGCGCTCCCTCTGCACACTGCAAACATAAACCCTAACTAGTAACTACCTTCTCCTATCNATGACTCAGAAGAAGACTATGCCCCGAAAAGAGAAAGAGGAGAAGAAGGAAGCCACACTTCCATCCGAGAAGGATTCCGACTCCGACTCTAGTTACGAGGACTCTTCTTCTGATGATGACGACGACTCTTCCGACTCACTTTATTCCCAATCTGAATCTGAATTAGAAGATGGTTCACCTGCAGATGATNGCTCCGGCGATTCAGAACACGCAGAAGCTGGATCCTCTCAAGATGAGGGCATTGCCAACTCAGATGGCGAAGATGGTGGAAGTGAGAGCTCCGATCTTCACCAGGAAGGAGCCGAGAGTGATTCCTCTGAGGATGAGGTGGCTCCCCGAAATACCATTGGAGATGTNCCTTTGAAGTGGTATGAGGATGAACCCCACATTGGATATGACATCAAAGGGAAAAAAATTAAGAAAAAGGAAAAGCTAGACAAATTGGGTTCCTTTCTTGCCAACGTTGATGATTCTAAGAACTGGCGGAAGATCTATGATGAGTACAACGATGAGGAAGTAGAACTGACAAAAGATGAAATCAAAATTGTCCGTAGACTGATCAAGAATCAGGCACCACATCCTGACTTTGATCCTCATCCGGATTATGTGGATTGGTTTAAATGGGATGATGCCAAGCACCCATTGTCTAATGCACCTGAACCAAAACGAAGGTTTATTCCTTCAAAGTGGGAAGCTAAAAAGGTTGTGCAGTATGTTAGAGCAATTCGCAAGGGATTAATAACTTTTGACAAGCCAAAAGAGGATGATGGTCCATATCTCTTGTGGGAAGATGATTCTGGATTGACAGAAAAAGCAAATCATTTGGCTTACATTCCTGCCCCAAAGCAGAAATTTCCTGGCCATGATGAATCATATAATCCTCCTTTAGAGTACATTCCAACCCAAGAAGAGATTAATTCATATCAATTGATGTATGAAGAAGACCGCCCTAAATTTATCCCAAAAAGGTTTACATCTATGAGAAGCATCCCTGCATATGAGAATGCTATGGAGGAATGTTTTGAACGCTGTTTGGATTTGTACTTGTGCCCTCGAGTTCGGAAAAAACGTCTTAATATTGATCCTGAGGCTTTAAAGCCAAAGCTTCCAAATAAAAAGGAGCTTAAGCCTTATCCCATAACATGCTATATCGAATATAAAGGCCATGAAGATGCAGTTACATCAATTTCCGTAGAAGCTTCAGGGCAGTGGATGGCTTCAGGTTCAAGTGACGGAACTGTCCGTATCTGGGAGGTTGAAACAGGCAGATGTCTGAGGCGGTGGGAGGTTGGTGAAGCTGTCAGCTGTGTTGCTTGGAATCCTCTTCCTGATATTCATATTCTAGCTGTCTCTGTGGGACAAGATGTACTTCTTCTAAACACTTGTTTGGGGGATGAAGAAGAACAGAAAAGGATTAAGGAGCTTCTCTGGGTTGACTCTCCAACAGCATCAGATGACCCTGGNACCAAAGCACCTAGTGTAAGCTGGCTTAAAGATGATCAACATGCGGGTATAAGGTTAAGACATTTCAAGACTGTTACTACTGTGGAATGGCACCGGAAAGGGGACTACTTTTCAACCGTGATGCCAGCAGATATCCTTTCCAAATCGGTTCTGATACACCAGTTATCCAAGAAACTTACACAAAAACTTCCATTCAAGTTACATGGACTTGCTGTTACATCAACCTTCCATCCATCCCGTTCCATCTTCTTTATTTGTACAAAAAAGAGTGTTCGCGTGTATGATTTATTGAAGACCAAGATCATAAAAAAGCTTGATACCGGTCTTCGTGAAGCCTCGTCCATTGCAGTTCATCCTGGAGGTGATAATTTAATTGTGGGGAGCAAAGAAGGGAAGCTTTGTTGGTTTGACATGGACCTTTCGTCTAAACCATATAAAATTCTTAAGTGTCACCCAAAAGATATCAACAATGTGGTCTTTCATCGTTCATATCCTTTGTTTGCTTCGTGTTCAGATGACTGCACTGCATATGTTTTTCATGGAATGGTTTATTCCGATCTCAATCAAAATCCTCTTATTGTTCCTTTGGAAATTCTGCGAGGCCATACAAATTCAAATGGGAGAGGGATATTGGACTGTAAATTTCACCCCAGACAACCCTGGTTATTTACAGCTGGTGCTGATAAATTGGTTAAACTTTACTGTCATTAATTTAAATATGGATATTCTGCTAAACATGCATGTGACAGGCGGATAACATCTTTAGTTAGAAGCCTGTATCGCCAATTTTGTTCCTCAATTGTTAAACAGAAAGCTGAAAGCACTGCTATTCCAAATGAAGGGCACGTGGTGATCGTGTTTCTGACTCTACATTTCTGGGTTGTTTTGTGGGAAATCGCTCGATATAATGCAGTGCGTATATTTGCATTCCACACTTTGCACATTTATCTTTCTAAATTTTTAGTTGAAATATCAGGAATTTATACTCGCAAAAATTCGCTTATGATTGAAATAGAACTGTAAACTAGATGTAATGTAATATATACTCCTATTTGGAGCCAATTATTTCAAGACATATGATGGATGCTTTCTTTTTTGTGAGATTAAATGCGACATTGCGTTTAGTTGTGTACTTAAATTGACTTGAAACAGTTCGCAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00192	115641	123232	-

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006364 rRNA processing

GO:0042254 ribosome biogenesis

molecular_function GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000192s00009335.1	PF08145.7	BOP1NT	124	379	4.60E-103
Glyur000192s00009335.1	PF00400.27	WD40	381	418	2.30E-10
Glyur000192s00009335.1	PF00400.27	WD40	631	667	7.40E-06
Glyur000192s00009335.1	PF00400.27	WD40	696	722	0.0016

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	25.908
SRR1783600	control	25.969
SRR1783602	moderate drought stress	18.424
SRR1811619	moderate drought stress	18.092

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	29.300
DRR006520	Root Summer glycyrrhizin high producing strain	29.079
DRR006521	Root Winter glycyrrhizin high producing strain	21.911
DRR006522	Root Winter glycyrrhizin high producing strain	21.514
DRR006523	Root Summer glycyrrhizin low producing strain	30.322
DRR006524	Root Summer glycyrrhizin low producing strain	30.354
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.509
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.506

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	54.759
SRR2868004	Drought Stress(Tissue:root)	38.849
SRR2967015	Control (Tissue:root)	34.409

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	16.654
SRR9715740	Leave	26.435
SRR9715741	Leave	17.164
SRR9715739	Root	5.397
SRR9715742	Root	30.090
SRR9715743	Root	25.280

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	53.514
SRR8749028	MeJA induced 9h	45.934
SRR8749029	MeJA induced 9h	26.894
SRR8749030	Uninduced	3.152
SRR8749031	Uninduced	1.773
SRR8749032	Uninduced	4.765

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	43.542
SRR8400027	Control-Root	40.004