Gene detail information of Glyur000192s00009345.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G06634.14.00E-120zinc finger (C2H2 type) family protein
NRXP_004485467.10PREDICTED: uncharacterized zinc finger protein At4g06634-like [Cicer arietinum]
COGYP_004117948.18.00E-13zinc finger C2H2-type domain-containing protein [Pantoea sp. At-9b]
Swissprottr|Q2V3L3|Y4634_ARATH2.00E-158Uncharacterized zinc finger protein At4g06634
trEMBLtr|I3SI97|I3SI97_MEDTR0Uncharacterized protein {ECO:0000313|EMBL:AFK39989.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00192182154186002+


Gene family

Gene familysubfamily
Transcription Factors FamilyC2H2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000192s00009345.1PF13894.1zf-C2H2_41201410.82
Glyur000192s00009345.1PF13465.1zf-H2C2_21661912.90E-05
Glyur000192s00009345.1PF13465.1zf-H2C2_21952220.00011
Glyur000192s00009345.1PF13894.1zf-C2H2_42732980.1


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control12.345
SRR1783600control12.322
SRR1783602moderate drought stress12.038
SRR1811619moderate drought stress12.012

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain17.745
DRR006520Root Summer glycyrrhizin high producing strain17.675
DRR006521Root Winter glycyrrhizin high producing strain12.526
DRR006522Root Winter glycyrrhizin high producing strain12.419
DRR006523Root Summer glycyrrhizin low producing strain21.624
DRR006524Root Summer glycyrrhizin low producing strain21.334
DRR006525Leaf Summer glycyrrhizin high producing strain8.918
DRR006526Leaf Summer glycyrrhizin high producing strain8.966

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)23.770
SRR2868004Drought Stress(Tissue:root)24.880
SRR2967015Control (Tissue:root)21.468

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave16.672
SRR9715740Leave21.078
SRR9715741Leave17.446
SRR9715739Root6.248
SRR9715742Root16.883
SRR9715743Root15.586

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h17.241
SRR8749028MeJA induced 9h17.268
SRR8749029MeJA induced 9h13.359
SRR8749030Uninduced13.310
SRR8749031Uninduced8.995
SRR8749032Uninduced10.756

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root22.277
SRR8400027Control-Root22.480

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved