Gene detail information of Glyur000192s00009359.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G22940.10thiamin biosynthesis protein, putative
NRXP_004485477.10PREDICTED: thiamine biosynthetic bifunctional enzyme TH1, chloroplastic-like [Cicer arietinum]
COGYP_003639492.12.00E-111phosphomethylpyrimidine kinase [Thermincola potens JR]
Swissprottr|Q5M731|TPS1L_ARATH0Hydroxymethylpyrimidine kinase (Precursor)
trEMBLtr|G7INQ6|G7INQ6_MEDTR0Thiamine-phosphate pyrophosphorylase {ECO:0000313|EMBL:AES63234.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00192237946242148-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K14153thiDE EC:2.7.1.49 2.7.4.7 2.5.1.3 Thiamine metabolism map00730


Gene Ontology

biological_process

GO:0009228  thiamine biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0004789  thiamine-phosphate diphosphorylase activity

GO:0008972  phosphomethylpyrimidine kinase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000192s00009359.1PF08543.7Phos_pyr_kin713149.30E-87
Glyur000192s00009359.1PF02581.12TMP-TENI3465303.80E-65


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control4.538
SRR1783600control4.629
SRR1783602moderate drought stress3.933
SRR1811619moderate drought stress3.876

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.434
DRR006520Root Summer glycyrrhizin high producing strain3.482
DRR006521Root Winter glycyrrhizin high producing strain4.662
DRR006522Root Winter glycyrrhizin high producing strain4.727
DRR006523Root Summer glycyrrhizin low producing strain6.639
DRR006524Root Summer glycyrrhizin low producing strain6.391
DRR006525Leaf Summer glycyrrhizin high producing strain9.653
DRR006526Leaf Summer glycyrrhizin high producing strain9.523

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)15.646
SRR2868004Drought Stress(Tissue:root)19.549
SRR2967015Control (Tissue:root)20.125

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave14.646
SRR9715740Leave15.983
SRR9715741Leave18.152
SRR9715739Root3.320
SRR9715742Root4.087
SRR9715743Root4.145

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.576
SRR8749028MeJA induced 9h12.323
SRR8749029MeJA induced 9h8.247
SRR8749030Uninduced13.520
SRR8749031Uninduced8.678
SRR8749032Uninduced6.059

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root15.363
SRR8400027Control-Root13.513

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved