Gene detail information of Glyur000192s00009360.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G10930.10DNA helicase (RECQl4A)
NRXP_004485478.10PREDICTED: ATP-dependent DNA helicase Q-like 4A-like isoform X1 [Cicer arietinum]
COGYP_003914955.15.00E-123ATP-dependent DNA helicase RecQ [Ferrimonas balearica DSM 9799]
Swissprottr|Q8L840|RQL4A_ARATH0ATP-dependent DNA helicase Q-like 4A
trEMBLtr|G7INR2|G7INR2_MEDTR0ATP-dependent DNA helicase RecQ family protein {ECO:0000313|EMBL:AES63240.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00192244562252270+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10901BLM, RECQL3, SGS1 EC:3.6.4.12 Homologous recombination map03440
Fanconi anemia pathwaymap03460


Gene Ontology

biological_process

GO:0006260  DNA replication

GO:0006281  DNA repair

GO:0006310  DNA recombination

GO:0044237  cellular metabolic process


cellular_component

GO:0005622  intracellular


molecular_function

GO:0000166  nucleotide binding

GO:0003676  nucleic acid binding

GO:0003824  catalytic activity

GO:0005524  ATP binding

GO:0008026  ATP-dependent helicase activity

GO:0043140  ATP-dependent 3'-5' DNA helicase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000192s00009360.1PF00270.24DEAD4195879.00E-17
Glyur000192s00009360.1PF00271.26Helicase_C6557314.40E-19
Glyur000192s00009360.1PF09382.5RQC8339422.40E-16
Glyur000192s00009360.1PF00570.18HRDC99010574.00E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.934
SRR1783600control0.899
SRR1783602moderate drought stress0.511
SRR1811619moderate drought stress0.436

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.431
DRR006520Root Summer glycyrrhizin high producing strain0.430
DRR006521Root Winter glycyrrhizin high producing strain0.346
DRR006522Root Winter glycyrrhizin high producing strain0.309
DRR006523Root Summer glycyrrhizin low producing strain0.406
DRR006524Root Summer glycyrrhizin low producing strain0.342
DRR006525Leaf Summer glycyrrhizin high producing strain0.418
DRR006526Leaf Summer glycyrrhizin high producing strain0.387

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)3.418
SRR2868004Drought Stress(Tissue:root)2.649
SRR2967015Control (Tissue:root)2.344

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.906
SRR9715740Leave0.220
SRR9715741Leave0.292
SRR9715739Root0.033
SRR9715742Root0.420
SRR9715743Root0.521

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.102
SRR8749028MeJA induced 9h4.794
SRR8749029MeJA induced 9h2.619
SRR8749030Uninduced0.737
SRR8749031Uninduced0.800
SRR8749032Uninduced0.300

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root2.761
SRR8400027Control-Root2.094

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved