Gene detail

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Gene detail information of Glyur000193s00013960.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G27690.1	8.00E-162	cytochrome P450, family 94, subfamily C, polypeptide 1
NR	XP_003596778.1	0	Cytochrome P450 [Medicago truncatula]
COG	YP_004448498.1	4.00E-34	monooxygenase [Haliscomenobacter hydrossis DSM 1100]
Swissprot	tr\|Q9ZUX1\|C94C1_ARATH	0	Cytochrome P450 94C1
trEMBL	tr\|G7IRD4\|G7IRD4_MEDTR	0	Cytochrome P450 family 94 protein {ECO:0000313\|EMBL:AES67029.1}

Sequence

Transcript Sequence

>Glyur000193s00013960.1
ATGAGTTCTGAAGCGTCGTCGACATGGCTACAAGAATCCATGCCAACCANCTTCACCTTCTTGTTTTTCTCCTTCACCCTCGCCTTTTCCCTATTCTCCTTCCTCATCTTCATCTCCAGGATGAAGCCATGGTGTAACTGCGACATTTGCTGGAGCTACCTAACAATGGGCTGGGCCAGNGAGTTCGTGAACCTCAGCGACTGGTACACCCACCTCCTCCGAAAATCTCCCACGGGAACCATCCACGTGCACGTGCTGGGAAACACCNTCACGTGCAACCCCAAGAACGTGGAGTACATGCTCAAGACCCGCTTCGACAACTACCCCAAGGGGAAACCGTTCTCCTCCATCCTCGGCGACCTCCTCGGAAAAGGAATCTTCAACGTCGACGGCGACACGTGGCACTTCCAGCGCAAGATGGCCAGCCTCGAACTCGGGAGCGTGGCGATTCGCTCCTACGCGCTCGAGATAGTCACCGAAGAGATCCACACGAGGCTCATTCCTCTCATGGAATCAGCCGCACGTGACGGCGATGGTGTAAAACCTGTACCCCTGTTGGACCTACAAGACATCATGCGACGATTCTCCTTCGACAACATCTGCAGATTCTCCTTCGGGTGGGACCCACGCTGTCTCCAACCGTCGCTGCCGGTTTCACACCTCGCCGACGCGTTCGACACCGCCTCGAAGCTCTCNGCGCAGCGCGCAATGGCGGCGTCGCCGTTGATATGGAAGATCAAGCGTTTTTTCAACGTGGGGTCAGAGAGGAAGCTGAGGGAAGCCATCAACGTCGTGAACGAGTTAACGGAGGAGATGNTTGAAAACCGAAGGAGGGAAGAGANTGGGTTCACCGCTCAGCGAAGAGACCTTCTCTCGAGGTTCATGGGATCGTTGAACGACGAAAAGTATCTGAGAGACATTGTGGTGAGTTTTTTGTTGGCGGGTCGTGACACGGTGGCGGCGGCGCTGACGTGTCTCTTCTGGCTGTTGTCTAAGCACCCGGAAGTGGAGGCGCTGATTCGGGACGAGGTGGACCGGGTGATGATGGACCGGCCGGTTCAGGAGTTTGCGAGCTTCGAACAGCTTCAGAGGATGCATTACCTGAACGCGGCGGTTCACGAGAGCATGAGGCTTTACCCGCCGGTTCAATTCGACTCGAAATTCGCGCGGGAGGATGACGTGTTACCGGATGGGACGTTCGTGAGGAAGGGGACTCGGGTTACGTACCACCCGTACGCGATGGGTCGGATGGAGCGGGTTTGGGGATCCGATTGTCTCGAATTCAAGCCGTGTAGGTGGTTGCGTGAGGACGGGGTATTTGTGCCCGAGAATCCGTTCAAGTACCCCGTATTCCAGGGCGGGGTTAGAGTGTGTTTGGGGAAGGATTTAGCTTTGGTGGAAATAAAATCTGTTGTGGCTGCCTTGGTAAGGAGGTTTGATATTCGGGTCGAAGGGGATAATCAGGAGCTCCGATTTGTCCCGGGTCTTACTGCCACACTGAGGGATGGTTTGACGGTTCGTGTTTTTCAAAGACCACGCTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00193	14097	15638	+

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP94C1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function GO:0005506 iron ion binding GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000193s00013960.1	PF00067.17	p450	91	490	3.30E-60

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.024
SRR1783602	moderate drought stress	0.025
SRR1811619	moderate drought stress	0.025

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.140
DRR006520	Root Summer glycyrrhizin high producing strain	0.139
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.070
DRR006524	Root Summer glycyrrhizin low producing strain	0.072
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.060
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.060

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	3.078
SRR2868004	Drought Stress(Tissue:root)	28.142
SRR2967015	Control (Tissue:root)	10.493

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	24.576
SRR9715740	Leave	4.739
SRR9715741	Leave	29.701
SRR9715739	Root	0.813
SRR9715742	Root	4.890
SRR9715743	Root	4.075

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	26.454
SRR8749028	MeJA induced 9h	66.003
SRR8749029	MeJA induced 9h	30.013
SRR8749030	Uninduced	79.319
SRR8749031	Uninduced	129.025
SRR8749032	Uninduced	149.026

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	26.250
SRR8400027	Control-Root	0.669