Gene detail information of Glyur000193s00013976.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G08250.13.00E-171arogenate dehydratase 6
NRXP_003540222.10PREDICTED: arogenate dehydratase 3, chloroplastic-like [Glycine max]
COGYP_004172970.12.00E-81prephenate dehydratase [Anaerolinea thermophila UNI-1]
Swissprottr|Q9SGD6|AROD6_ARATH0Arogenate dehydratase/prephenate dehydratase 6, chloroplastic (Precursor)
trEMBLtr|I1LTS0|I1LTS0_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G30660.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00193160025161320+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05359ADT, PDT EC:4.2.1.91 4.2.1.51 Biosynthesis of amino acids map01230
Phenylalanine, tyrosine and tryptophan biosynthesismap00400


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0009094  L-phenylalanine biosynthetic process


molecular_function

GO:0004664  prephenate dehydratase activity

GO:0016597  amino acid binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000193s00013976.1PF00800.13PDT1373152.20E-58


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control33.219
SRR1783600control32.895
SRR1783602moderate drought stress39.208
SRR1811619moderate drought stress39.152

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain45.918
DRR006520Root Summer glycyrrhizin high producing strain45.318
DRR006521Root Winter glycyrrhizin high producing strain1.948
DRR006522Root Winter glycyrrhizin high producing strain2.066
DRR006523Root Summer glycyrrhizin low producing strain74.970
DRR006524Root Summer glycyrrhizin low producing strain71.149
DRR006525Leaf Summer glycyrrhizin high producing strain49.100
DRR006526Leaf Summer glycyrrhizin high producing strain48.909

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)85.023
SRR2868004Drought Stress(Tissue:root)152.870
SRR2967015Control (Tissue:root)134.406

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave248.604
SRR9715740Leave178.497
SRR9715741Leave263.466
SRR9715739Root349.357
SRR9715742Root336.334
SRR9715743Root334.475

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h64.104
SRR8749028MeJA induced 9h59.884
SRR8749029MeJA induced 9h36.989
SRR8749030Uninduced78.351
SRR8749031Uninduced23.129
SRR8749032Uninduced50.068

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root46.790
SRR8400027Control-Root66.232

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved