Gene detail information of Glyur000193s00013989.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G22750.10DNA/RNA helicase protein
NRXP_004487536.10PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2-like isoform X1 [Cicer arietinum]
COGYP_006719961.12.00E-34helicase [Geobacter metallireducens GS-15]
Swissprottr|Q9FNI6|SM3L2_ARATH0Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2
trEMBLtr|A0A072VAY9|A0A072VAY9_MEDTR0DNA/RNA helicase {ECO:0000313|EMBL:KEH38927.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00193228544237325-


Gene family

Gene familysubfamily
Transcription Factors FamilySNF2
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0003677  DNA binding

GO:0005515  protein binding

GO:0005524  ATP binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000193s00013989.1PF00176.18SNF2_N2996901.20E-84
Glyur000193s00013989.1PF13920.1zf-C3HC4_37427896.20E-10
Glyur000193s00013989.1PF00271.26Helicase_C8529277.50E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.984
SRR1783600control7.037
SRR1783602moderate drought stress8.403
SRR1811619moderate drought stress8.258

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.410
DRR006520Root Summer glycyrrhizin high producing strain4.550
DRR006521Root Winter glycyrrhizin high producing strain2.498
DRR006522Root Winter glycyrrhizin high producing strain2.472
DRR006523Root Summer glycyrrhizin low producing strain3.087
DRR006524Root Summer glycyrrhizin low producing strain3.075
DRR006525Leaf Summer glycyrrhizin high producing strain2.508
DRR006526Leaf Summer glycyrrhizin high producing strain2.578

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)6.915
SRR2868004Drought Stress(Tissue:root)6.394
SRR2967015Control (Tissue:root)6.567

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.673
SRR9715740Leave4.153
SRR9715741Leave4.737
SRR9715739Root3.110
SRR9715742Root4.879
SRR9715743Root4.771

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h7.061
SRR8749028MeJA induced 9h7.671
SRR8749029MeJA induced 9h5.017
SRR8749030Uninduced3.046
SRR8749031Uninduced2.222
SRR8749032Uninduced3.176

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root8.303
SRR8400027Control-Root7.258

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved