Gene detail information of Glyur000194s00016320.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G51460.2 | 8.00E-88 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein |
| NR | XP_007135244.1 | 0 | hypothetical protein PHAVU_010G112900g [Phaseolus vulgaris] |
| COG | YP_003269585.1 | 6.00E-60 | trehalose-phosphatase [Haliangium ochraceum DSM 14365] |
| Swissprot | tr|Q9C9S4|TPPB_ARATH | 7.00E-110 | Trehalose-phosphate phosphatase B |
| trEMBL | tr|V7ARK5|V7ARK5_PHAVU | 0 | Trehalose 6-phosphate phosphatase {ECO:0000256|RuleBase:RU361117} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00194 | 13717 | 15806 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01087 | otsB | EC:3.1.3.12 | Starch and sucrose metabolism | map00500 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000194s00016320.1 | PF02358.11 | Trehalose_PPase | 49 | 293 | 2.70E-66 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.132 |
| SRR1783600 | control | 0.154 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.006 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.097 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.967 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.277 |
| SRR2967015 | Control (Tissue:root) | 2.797 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.799 |
| SRR9715740 | Leave | 0.444 |
| SRR9715741 | Leave | 0.877 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.590 |
| SRR8400027 | Control-Root | 0.376 |