Gene detail information of Glyur000195s00012839.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G62990.1 | 9.00E-128 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |
| NR | XP_007158449.1 | 0 | hypothetical protein PHAVU_002G153300g [Phaseolus vulgaris] |
| Swissprot | tr|Q9FPQ8|KNAT7_ARATH | 5.00E-163 | Homeobox protein knotted-1-like 7 |
| trEMBL | tr|V7CM51|V7CM51_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW30443.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00195 | 46669 | 55591 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000195s00012839.1 | PF03790.8 | KNOX1 | 31 | 73 | 4.20E-18 |
| Glyur000195s00012839.1 | PF03791.8 | KNOX2 | 88 | 141 | 6.90E-18 |
| Glyur000195s00012839.1 | PF03789.8 | ELK | 196 | 217 | 7.50E-06 |
| Glyur000195s00012839.1 | PF05920.6 | Homeobox_KN | 236 | 275 | 2.90E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 24.109 |
| SRR1783600 | control | 24.124 |
| SRR1783602 | moderate drought stress | 32.645 |
| SRR1811619 | moderate drought stress | 32.405 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.527 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.125 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.415 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.094 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 31.902 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 31.853 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 28.827 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 28.901 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 62.250 |
| SRR2868004 | Drought Stress(Tissue:root) | 74.008 |
| SRR2967015 | Control (Tissue:root) | 74.329 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 50.875 |
| SRR9715740 | Leave | 106.483 |
| SRR9715741 | Leave | 67.068 |
| SRR9715739 | Root | 7.225 |
| SRR9715742 | Root | 20.672 |
| SRR9715743 | Root | 18.525 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.361 |
| SRR8749028 | MeJA induced 9h | 25.632 |
| SRR8749029 | MeJA induced 9h | 10.083 |
| SRR8749030 | Uninduced | 23.790 |
| SRR8749031 | Uninduced | 6.756 |
| SRR8749032 | Uninduced | 11.126 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 35.611 |
| SRR8400027 | Control-Root | 33.204 |