Gene detail information of Glyur000195s00012841.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G11820.20hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase
NRXP_003538436.10PREDICTED: hydroxymethylglutaryl-CoA synthase-like [Glycine max]
COGYP_632442.18.00E-46hydroxymethylglutaryl-CoA synthase [Myxococcus xanthus DK 1622]
Swissprottr|P54873|HMCS_ARATH0Hydroxymethylglutaryl-CoA synthase
trEMBLtr|I1LGI7|I1LGI7_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G02950.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001956617570864-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01641E2.3.3.10 EC:2.3.3.10 Butanoate metabolism map00650
Synthesis and degradation of ketone bodiesmap00072
Valine, leucine and isoleucine degradationmap00280
Terpenoid backbone biosynthesismap00900


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0008299  isoprenoid biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0004421  hydroxymethylglutaryl-CoA synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000195s00012841.1PF01154.12HMG_CoA_synt_N41674.80E-73
Glyur000195s00012841.1PF08540.5HMG_CoA_synt_C1684428.30E-116


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control144.521
SRR1783600control144.812
SRR1783602moderate drought stress46.381
SRR1811619moderate drought stress45.895

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain145.562
DRR006520Root Summer glycyrrhizin high producing strain142.601
DRR006521Root Winter glycyrrhizin high producing strain5.736
DRR006522Root Winter glycyrrhizin high producing strain5.409
DRR006523Root Summer glycyrrhizin low producing strain16.178
DRR006524Root Summer glycyrrhizin low producing strain16.095
DRR006525Leaf Summer glycyrrhizin high producing strain2.709
DRR006526Leaf Summer glycyrrhizin high producing strain2.652

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)427.996
SRR2868004Drought Stress(Tissue:root)130.167
SRR2967015Control (Tissue:root)118.455

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave12.031
SRR9715740Leave3.623
SRR9715741Leave4.592
SRR9715739Root243.399
SRR9715742Root468.945
SRR9715743Root439.956

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h22.281
SRR8749028MeJA induced 9h9.186
SRR8749029MeJA induced 9h14.036
SRR8749030Uninduced2.703
SRR8749031Uninduced1.481
SRR8749032Uninduced6.455

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root444.128
SRR8400027Control-Root489.955

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved